Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00101 ATGGCCTCCCACTCAAACCAACCAGCAGGAGCAGGACCCGGAGCTGAAGGCCAAGGAGAAAAGGACCCCCCACCAACAACCTCCCAGAACCCGCTTTCCGAGATATCCCCGTCGCCGTCTCCCTCATCGGCGACTGCGCCGGCGCTGGTGCTGTCGAACTCGGGGAAGCGAATCGACCAGGCGGGGAAAAAGAAGTACGTGAAGCAGGTGACGGGGCGGCACAACGACACCGAGCTCCACCTCGCCGCGCAGAGGGGCGACGTCGGCGCCGTCAGGCAGATCCTTCTGGATGTTGATTCTCAGATTATGGGCACTCTGAGTGGCGACGACGATGATCTCAACGCCGAGATTGCTGAAGTGCGTGCTTGTCTTGTCAACGAAGAGAACGAGCTCGGTGAGACACCTCTGTTCACTGCTGCTGAAAGGGGTCACCTCGATGTGGTCAAGGAACTGCTCAACCATTCCACCGCTCAGACCGTTTCCAACAAGAACCGATCCGGATTTGATCCTTTGCATATTGCTGCTAGTCAAGGCCACCACCCCATTGTTCAGGTTTTGCTAGATTATGACCCAGGATTGAGCAAAACTATTGGTCCCTCCAATTCCACTCCGCTTATAACTGCAGCTACAAGAGGGCACACTGAAGTGGTGAATGAGCTGCTGTCGAAGGATTGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAATGCATTGCATTTAGCGGCTCGTCAGGGTCATGTGGAGATTGTGAAAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCACTGCATATGGCTGTAAAGGGGCAGAGTTGTGATGTGGTGAAATTGCTTCTTGAGGCAGATGCTGCTATTGTTATGCTTCCTGATAAATTTGGTAACACAGCGTTACATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTATTACATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCTCTTGACATTGCTGAAAATCTTCCCCTCTCTGAAGAGGCATCAGATATAAAGGACTGTCTTTCTCGATATGGAGCACTTAGAGCCAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACTGTTACTCAAATCAAGAAAGATGTTCACACCCAACTTGAACAAACCAAGAGAACCAACAAGAATGTTCACAATATTTCCAAAGAGCTAAGGAAACTCCACAGGGAAGGAATCAACAATGCCACAAACTCAGTAACAGTGGTGGCTGTGTTGTTTGCCACAGTTGCTTTTGCTGCTATATTCACTGTGCCTGGTGGGGATAAAGATGATGGCTCAGCAGTGGTAGCAGCTTATGCTGCTTTTAAAATCTTCTTTGTTTTTAATGCTATTGCACTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCTTGGTTAGAGGTGAAACTAAGGCAGAGAAAAGGGTGGTAGAGGTGATCAACAAGCTCATGTGGTTGGCTTCTGTCTGTACTTCAGTGGCATTTATTGCCTCTTCTTACATAGTTGTGGGTAGGAAGAATGAGTGGGCTGCAATTCTAGTTACATTAGTTGGAGGGGTGATAATATCTGGAGTTATTGGCACTATGACTTACTATGTAGTGAGGTCTAAGAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAAGCTGCCAGGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCCAATTCCGAGGGTGATCGGATTTATGCACTTTGA 1785 0.4801 MASHSNQPAGAGPGAEGQGEKDPPPTTSQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVDSQIMGTLSGDDDDLNAEIAEVRACLVNEENELGETPLFTAAERGHLDVVKELLNHSTAQTVSNKNRSGFDPLHIAASQGHHPIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLEADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAENLPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDKDDGSAVVAAYAAFKIFFVFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRKNEWAAILVTLVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQAARRSGSNSWHHSEFSNSEGDRIYAL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00101 594 ProSiteProfiles Ankyrin repeat profile. 131 163 IPR002110 GO:0005515
Pumo3g00101 594 FunFam Ankyrin repeat-containing protein ITN1 48 192 - -
Pumo3g00101 594 Pfam Ankyrin repeats (3 copies) 79 192 IPR002110 GO:0005515
Pumo3g00101 594 Pfam Ankyrin repeats (3 copies) 266 331 IPR002110 GO:0005515
Pumo3g00101 594 Pfam Ankyrin repeats (3 copies) 200 259 IPR002110 GO:0005515
Pumo3g00101 594 MobiDBLite consensus disorder prediction 1 47 - -
Pumo3g00101 594 SUPERFAMILY Ankyrin repeat 79 348 IPR036770 -
Pumo3g00101 594 ProSiteProfiles Ankyrin repeat profile. 234 266 IPR002110 GO:0005515
Pumo3g00101 594 SMART ANK_2a 74 103 IPR002110 GO:0005515
Pumo3g00101 594 SMART ANK_2a 131 160 IPR002110 GO:0005515
Pumo3g00101 594 SMART ANK_2a 268 297 IPR002110 GO:0005515
Pumo3g00101 594 SMART ANK_2a 166 195 IPR002110 GO:0005515
Pumo3g00101 594 SMART ANK_2a 234 263 IPR002110 GO:0005515
Pumo3g00101 594 SMART ANK_2a 200 229 IPR002110 GO:0005515
Pumo3g00101 594 SMART ANK_2a 302 332 IPR002110 GO:0005515
Pumo3g00101 594 MobiDBLite consensus disorder prediction 563 594 - -
Pumo3g00101 594 ProSiteProfiles Ankyrin repeat region circular profile. 166 188 - -
Pumo3g00101 594 Gene3D - 54 190 IPR036770 -
Pumo3g00101 594 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 46 578 - -
Pumo3g00101 594 ProSiteProfiles Ankyrin repeat profile. 268 300 IPR002110 GO:0005515
Pumo3g00101 594 ProSiteProfiles Ankyrin repeat region circular profile. 268 295 - -
Pumo3g00101 594 FunFam Ankyrin repeat-containing protein ITN1 isoform A 193 392 - -
Pumo3g00101 594 Gene3D - 191 402 IPR036770 -
Pumo3g00101 594 ProSiteProfiles Ankyrin repeat region circular profile. 234 257 - -
Pumo3g00101 594 Pfam Domain of unknown function 416 522 IPR026961 -
Pumo3g00101 594 ProSiteProfiles Ankyrin repeat profile. 166 188 IPR002110 GO:0005515
Pumo3g00101 594 MobiDBLite consensus disorder prediction 22 47 - -
Pumo3g00101 594 ProSiteProfiles Ankyrin repeat region circular profile. 131 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00101 Pumo-Chr3 1349049 1352855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00101 28 594 Miscellaneous Gene Families AT3G12360 80.810 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00101 - - gmx:100777929 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02987 5 77810051 77812665 Pumo3g00101 3 1349049 1352855 ECH
Pumo3g00101 3 1349049 1352855 Pumo3g00101 3 1349049 1352855 ECH