Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02823 ATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAGGGGCGAGTTTATAAAGAAAATTACAGAAGAGACTAAGGCGCGAATTAAGATTCTGGATGGTCCACCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGGTCGCCCCATACCACCTGCTGTTGATGGTTTGTTGAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGACCTTGCGGACAGTGCATTGGCTGCTGGACGATCAATTGTTACCAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGAGCAACCATAAAATCCATTCAAGATGGCTCTGGTTGCACTATACGTGTTCTTGGATCAGAAAACCTGCCAGTATTTGCTTTGAGAGATGATAGTATTGTTGAAATACAAGGGGAATCTGCTGGTGTTCACAAGGCAGTTGAACTTATTGCAGTTCATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTTGAAACGCAGATGCAAATGCCAGATGTTAGAGTTAACCAGAATGTGCCACCACATCAAAATTGGGGTCCTCCACCTCAAGGGTTTCCTGCTCCTGCTGGTGGTGGTGGTGGAGGACCTGCTTTTGCACCTAATCATCAATATATGCCACCACCTTCACATCACTATGATAGTTATTACCCACCTACTGAGTTGCCTCCCATGGACAAGCACCTTCATCAAGGTCCACCACCTGCCTATGCAAGGGATGCTTCTATGGGAATTCATTCATCAAGTTCACAACCACAACAATCTCTTGTAACTAAGGTCACACAGCACATGCAAATTCCTCTTTCATATGCAGATGCTGTTATAGGAGCATCAGGCTCAAATATCAGCTATATTCGTCGTGCTAGTGGATCAAGTATTACAATTCAGGAAACAAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGGACTTCTTCTCAAATACAGGCAGCCCAGCAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCCGATGGGGGGATCAGTTAGCCAAGGTTACAGTGCCTATCCAACTAATGCTCCGGTTTATGCATCTCCACCCGCTAGCACTGGTGGTCATACGGGCCATGCCCCTTCTGCAGATTATGGCCCCGTATATGGTACCAATTATGGGTATTGA 1215 0.4634 MSSGCWFQCKRLAVLLAERGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPGRPIPPAVDGLLRVHKQVINVDRDLADSALAAGRSIVTRLLVADTQAGSLIGKQGATIKSIQDGSGCTIRVLGSENLPVFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFETQMQMPDVRVNQNVPPHQNWGPPPQGFPAPAGGGGGGPAFAPNHQYMPPPSHHYDSYYPPTELPPMDKHLHQGPPPAYARDASMGIHSSSSQPQQSLVTKVTQHMQIPLSYADAVIGASGSNISYIRRASGSSITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFMAEAASAAQDPMGGSVSQGYSAYPTNAPVYASPPASTGGHTGHAPSADYGPVYGTNYGY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02823 404 Gene3D - 8 169 - -
Pumo5g02823 404 Gene3D K Homology domain, type 1 265 354 IPR036612 GO:0003723
Pumo5g02823 404 Pfam KH domain 94 160 IPR004088 GO:0003723
Pumo5g02823 404 Pfam KH domain 280 343 IPR004088 GO:0003723
Pumo5g02823 404 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 88 174 IPR036612 GO:0003723
Pumo5g02823 404 CDD KH-I_PEPPER_rpt2_like 93 165 - -
Pumo5g02823 404 Coils Coil 335 355 - -
Pumo5g02823 404 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 268 349 IPR036612 GO:0003723
Pumo5g02823 404 SMART kh_6 277 347 IPR004087 GO:0003676
Pumo5g02823 404 SMART kh_6 90 165 IPR004087 GO:0003676
Pumo5g02823 404 CDD KH-I_PEPPER_like_rpt3 278 346 - -
Pumo5g02823 404 ProSiteProfiles Type-1 KH domain profile. 278 342 - -
Pumo5g02823 404 ProSiteProfiles Type-1 KH domain profile. 91 160 - -
Pumo5g02823 404 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 13 54 IPR036612 GO:0003723
Pumo5g02823 404 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 18 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02823 Pumo-Chr5 75348148 75352464 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02823 K21444 - gmx:100799901 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02823 5 75348148 75352464 Pumo3g02420 3 36709446 36715398 PCT