Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02420 ATGTCTGGGGAAGTTTATGATGGACAAGATGCAGGCTATGTGCCTGAGAACCCTGAGTTTCCGCAAAACCATTCTGATGAACACGATGGAGGAAATGTGATCGATGACTCAGGGTTTCCGCAGCTGCCGCCTGATGAACACGATGTGGGCAATTTGGCCGAGGATGCCAATCCTCCCGAAAATAATTTTGACGGGAATGATGTTGAAGGTTTGCCCGGAAACCCTGATTTTCCTCCTCAAGAGCATGCCGAGGAACAGCATGTTGGAGGAGACGTGACTGAGAATTTTGGCTCTGAGGAAAAGCAGGGATCTGAGGAGGATTTGAAAGGAGGTGAAGTAAAGAAGTGGCCAGGGTGGCCTGGAGAGAATGTTTTTAGGATGTTGGTTCCTGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAAGGAGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGTATAAAAATCCTTGATGGTCCACCTGGAACTGCAGAAAGAGCTGTTATGGTTTCTGCAAAAGAAGAGCCAGATCGCAGCATACCGCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTGGACCCTCATCCTGCTGATAGTGCATCTGCTGCAGGACGCCCAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAAGCGGGAAGCTTGATTGGGAAGCAGGGGTCCACTATAAAATCCTTTCAAGATGCCACAGGTTGCAATATACGTGTTCTTGGTTCAGAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGAGAATCTTCTGGGGTTCACAAGGCAGTTGAACTTGTTGCAATTCATCTACGTAAATTCTTAGTTGACCGCAGCATAGTTGGAGTATTTGAAACACAGATGCAAAGGCCAGATATTCGACCAAACCAAAATGTGCCACCAGGCCCACCACACCAACCTTGGGGTCCTCAAGGTTTTCCAGCTCCTGGACCTGGTAGTGGTGGTGGACCTGCTTTTCCACCCAATCCTCAGTATATGCCGCCTTCACATAACTATGATAATTACTACCCTCCTGCTGACCTGCCTCCCATGGACAAACACCTTCATCAGGGTCCAGCACCTGCTTATGGAAGGGATGCTTCTATGGGAATTCATTCATCCAGTGCACAGCCGCAACAATCTGTCGTGACTAAGGTCACGCAGCACATGCAAATTCCTCTGTCCTATGCAGATGCTGTTATTGGAGCATCAGGGGCAAACATCAGCTACATCCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCAGGAGAGATGACTGTTGAGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGATCAATTAACCAAGGTTACAATTCCTATCCTACTAATGCTCCAGTCTATGCATCCCCGCCCTCAAGCGCTACTGGTCATGCAGGCCATGTACCTTCTGCAGATTATGGTCCCGTTTATGGCACCAATTATGGTTATTGA 1581 0.4769 MSGEVYDGQDAGYVPENPEFPQNHSDEHDGGNVIDDSGFPQLPPDEHDVGNLAEDANPPENNFDGNDVEGLPGNPDFPPQEHAEEQHVGGDVTENFGSEEKQGSEEDLKGGEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAVMVSAKEEPDRSIPPAVDGLLRVHKQVVNVDPHPADSASAAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDATGCNIRVLGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAIHLRKFLVDRSIVGVFETQMQRPDIRPNQNVPPGPPHQPWGPQGFPAPGPGSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPAPAYGRDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASAAQDHMGGSINQGYNSYPTNAPVYASPPSSATGHAGHVPSADYGPVYGTNYGY 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02420 526 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 391 471 IPR036612 GO:0003723
Pumo3g02420 526 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 114 177 IPR036612 GO:0003723
Pumo3g02420 526 MobiDBLite consensus disorder prediction 1 116 - -
Pumo3g02420 526 Pfam KH domain 216 282 IPR004088 GO:0003723
Pumo3g02420 526 Pfam KH domain 402 465 IPR004088 GO:0003723
Pumo3g02420 526 Pfam KH domain 125 177 IPR004088 GO:0003723
Pumo3g02420 526 Gene3D - 122 290 - -
Pumo3g02420 526 CDD KH-I_PEPPER_like_rpt3 400 468 - -
Pumo3g02420 526 CDD KH-I_PEPPER_rpt1_like 122 190 - -
Pumo3g02420 526 MobiDBLite consensus disorder prediction 307 340 - -
Pumo3g02420 526 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 208 295 IPR036612 GO:0003723
Pumo3g02420 526 ProSiteProfiles Type-1 KH domain profile. 213 282 - -
Pumo3g02420 526 MobiDBLite consensus disorder prediction 311 329 - -
Pumo3g02420 526 Coils Coil 457 477 - -
Pumo3g02420 526 CDD KH-I_PEPPER_rpt2_like 215 287 - -
Pumo3g02420 526 ProSiteProfiles Type-1 KH domain profile. 400 464 - -
Pumo3g02420 526 ProSiteProfiles Type-1 KH domain profile. 122 189 - -
Pumo3g02420 526 Gene3D K Homology domain, type 1 387 476 IPR036612 GO:0003723
Pumo3g02420 526 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 114 491 - -
Pumo3g02420 526 MobiDBLite consensus disorder prediction 98 113 - -
Pumo3g02420 526 SMART kh_6 121 194 IPR004087 GO:0003676
Pumo3g02420 526 SMART kh_6 399 469 IPR004087 GO:0003676
Pumo3g02420 526 SMART kh_6 212 287 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02420 Pumo-Chr3 36709446 36715398 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02420 K21444 - gmx:100818363 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02823 5 75348148 75352464 Pumo3g02420 3 36709446 36715398 PCT