Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02792 ATGAGGAGTTTCTTCCCTGCTGAATCCTGTAAAGAGGCTCACCCAAATGCTTTGAATCCTCAGTCTTGGCTTCAAATTGAAAGAGGGAAACTTCCCAAGTTGTCATCACACCCCTCATCTGCCTCAATAGAATCTCTGATCAAGGTCCCACAGCCAGCTATACTGCCTTTCTTTAAGCCTGTTGATTATGTGGAAGTTTTAGCTCAAATCCATGAAGAACTTGAGTCTTGTCCTCCCCAGGAGAGATCGAATTTGTTCTTGTTACAATACCAGGTCTTTAGGGGCCTTGGGGAAGTTAAACTGATGCGTAGAAGCCTCCAGGGAGCTTGGCAGAAAGCCCACACTGTTCATGAGAAGATTATATTTGGGGCTTGGTTGAAATATGAGAAGCAAGAGGAAGAGCTAATAGCCGACTTGCTTGCAACTTGTGGTAAATGTGCGAGGGAGTTTGCGCCTGTAGATATAGCATCTCATCTTCTATTTGATGTAAATGCAAGTTCTGAGGGGAGAATGACCAATAAGAATCGTATGTCTCAAAATGTTACTTTTACGATTGGAAATGAAAAGATAGTTTGTGATAGACAAAAAATTTCAGAACTTTCTGCACCATTTCATGCAATGCTAAAGGGGCATTTCAGTGAATCACTCTCTGAGACTATAGATTTGTCTGAAAATAATATCTCTCCTTCAGGTATGAAGGCAATAAGTGATTTCAGTTCGACTGGCTGTTTAATTGAGGTCCCTCCAAATCTTTTGTTGGAGATATTAGTTTTCGCAAACAAGTATTGTTGTGAAAGACTTAAAGATGCTTGCGATAGAAGACTTGCATCCTTAGTTTCCTCCAAAGAAGATGCTGTGGAGCTCGTAGAATATGCTCTTGATGAGCATTCAACTGTCCTTGCTGCATCTTGTTTACAAGTCCTTTTGCGTAATCTTCCAACCTGTTTGAATGACAATCGGGTGGTGGAGATATTTGTTCATACTAATAAACAGCAGCTATCAGTCATGGTTGGGCCAGGTATATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACAACAGCTCATATCCTGGAACGGTTAGTTGAGTATGCTGAGAATGACAAGCAGAGACTACTGGCTTTACATCAATTGGGATGTGTAAGACTCTTAAGGAAAGAATATGATGAAGCGCGTCGTCTTTTTGAAGGGGCTGTAAATGCAGGCCATATATATTCTGTGGCAGGTTTAGCTAGATTGGACTATATAAAGGGCGACAAGCTTTTATCTTATGGGCAGCTCAGCTCAGTTATTTCATCTGTTACTCCACTTGGATGGATGTATCAGGAAAGATCACTATACTGTGACGGTGACAAAAGGTGGGAGGACCTTGATAAAGCAAGTAATCTGGATCCTACTCTTATATATCCTTACATGTACAGAGCTGCCTCTTTAATGAGGACGCAGAATGCTCAAGCTGCACTAGCAGAAATCAATCGGATTCTTGGCTTCAAACTTTCACTAGAATGCTTGGAAATACGATTTTTTATCCACCTAGCTCTTGAGGACTACAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACTTTGCGTTCAGATTATAGAATGTTTGAGGGGCGTGTTGCTGCATCCCAACTCTGTACTCTTGTGCGTGAGCATGTTGAATGTTGGACAACTGCAGATTGTTGGGCACGGTTATATGATTGTTGGTCTGCAGTTGATGATATTGGGTCTCTGTCTGTTATCTACCAGATGCTTGAATCTGATGCGGCAAAAGGTATTCTATACTTCAGACAGTCACTGCTTCTCCTAAGGTTGAACTGCCCTGAGGCTGCTATGCGGAGTTTACAGTTAGCTCGGCAACATGCATCAAGTGAGCACGAACGACTTGTATATGAGGGGTGGATCTTATATGATACAGGTCATTATAAGGAAGGGCTCCTGAAAGCTGAAGAGTCTATCAATATCAAAAGATCTTTTGAGGCCTTTTTCCTGAAGGCATATGCATTGGCTGACTCTAGTATAGATCCATCATGTTCACCAACTGTTATTTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCAGATAATCTGCGCAAAGGTCAGGCACTGAACAATCTTGGAAGTGTTTACGTTGACTCTGGAAAATTGGACTTGGCTGCTGATTGTTATATCAATGCCCTTAAAATCCGACACACCCGAGCTCATCATGGCCTTGCTCGCGTTCATTGTCTCCAAAATGATAGGGCTGCTGCTTATATGGAAATGACCGAACTTATTAAGAAGGCAAAAAACAATGCATCTGCTTATGAGAAGAGGTCTGAGTACTGTGATCGTGAACAAGTAATGGCAGATCTGGAGATGGTCACTAGATTAGATCCACTTCGGGTGTATCCTTATAGATATCGTGCTGCAGTATTGATGGACAACCATATGGAAGAGGAAGCCATTGCAGAACTCTCTAGAGCTATTGCATTTAAAGCAGATTTGCACCTCTTGCATCTACGTGCAGCATTCCATGAACATAAAGAGGATGTCTTAGGTGCTCTAAGAGACTGTCGTGCTGCCCTCTCAGTGGACCCAAACCACCAAGAAATGTTGGAACTTCATAGTCGAGTCAATAGACACGAGCCATGA 2661 0.4194 MRSFFPAESCKEAHPNALNPQSWLQIERGKLPKLSSHPSSASIESLIKVPQPAILPFFKPVDYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQKAHTVHEKIIFGAWLKYEKQEEELIADLLATCGKCAREFAPVDIASHLLFDVNASSEGRMTNKNRMSQNVTFTIGNEKIVCDRQKISELSAPFHAMLKGHFSESLSETIDLSENNISPSGMKAISDFSSTGCLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELVEYALDEHSTVLAASCLQVLLRNLPTCLNDNRVVEIFVHTNKQQLSVMVGPGIFALFCFLSEVSMNLNSSSDTTAHILERLVEYAENDKQRLLALHQLGCVRLLRKEYDEARRLFEGAVNAGHIYSVAGLARLDYIKGDKLLSYGQLSSVISSVTPLGWMYQERSLYCDGDKRWEDLDKASNLDPTLIYPYMYRAASLMRTQNAQAALAEINRILGFKLSLECLEIRFFIHLALEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVECWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGILYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYKEGLLKAEESINIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKGQALNNLGSVYVDSGKLDLAADCYINALKIRHTRAHHGLARVHCLQNDRAAAYMEMTELIKKAKNNASAYEKRSEYCDREQVMADLEMVTRLDPLRVYPYRYRAAVLMDNHMEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNRHEP 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02792 886 SMART BTB_4 179 279 IPR000210 GO:0005515
Pumo5g02792 886 Gene3D Tetratricopeptide repeat domain 359 546 IPR011990 GO:0005515
Pumo5g02792 886 ProSiteProfiles TPR repeat profile. 709 742 IPR019734 GO:0005515
Pumo5g02792 886 SUPERFAMILY TPR-like 381 738 IPR011990 GO:0005515
Pumo5g02792 886 Coils Coil 761 781 - -
Pumo5g02792 886 SUPERFAMILY TPR-like 692 877 IPR011990 GO:0005515
Pumo5g02792 886 Gene3D Tetratricopeptide repeat domain 787 884 IPR011990 GO:0005515
Pumo5g02792 886 Gene3D Potassium Channel Kv1.1; Chain A 169 319 IPR011333 -
Pumo5g02792 886 SUPERFAMILY POZ domain 175 275 IPR011333 -
Pumo5g02792 886 SMART tpr_5 709 742 IPR019734 GO:0005515
Pumo5g02792 886 SMART tpr_5 601 634 IPR019734 GO:0005515
Pumo5g02792 886 SMART tpr_5 838 871 IPR019734 GO:0005515
Pumo5g02792 886 SMART tpr_5 380 413 IPR019734 GO:0005515
Pumo5g02792 886 Gene3D Tetratricopeptide repeat domain 592 786 IPR011990 GO:0005515
Pumo5g02792 886 PANTHER ETO1-RELATED 1 885 IPR044631 GO:0010105
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02792 Pumo-Chr5 74916902 74930145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02792 - - gmx:100793740 1672.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02792 5 74916902 74930145 Pumo3g02376 3 36080167 36085316 PCT