Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02780 ATGGCACCCAGAAGAATTGAGATGCTGCTGAGCATGTCCCTTGTGATGGCTCTCTGGGGTGTCACATTGGCTCAATCTCAATCAAGTTGCACCAATGTGTTCATAAGTCTTTCTCCCTGCCTTGACTATGTAACAGGAAATGCCTCTACTCCTTCCTCTTCTTGCTGCTCTCAACTTGCCCTTGTGGTGAGGTCACAGCCACTGTGCCTATGTGAGGTTGTTAATGGTGGTGCTTCATCTATTGCTGCCAGTTTCAACATCAATCAGACTCGGGCTTTGGCACTCCCCACTTCTTGCAACGTTCAGACACCTCCTATTAGCACCTGCAGTGCCTCAGCTTCTTCCTCACAAGGTGTTTCTGTTTCCAACTTTCCGAATTCCCCTTCAGGAATTGGATCTAACACTGTTTCATCAACGACCGGAGGCAGTAGAAGTGTCGGTGGCTCATATCATGAAAATTCAAGTTCCACTAAATTGCCATGTTCTTTGCTTGTCATGTTTGTCCTTGCAACGACTTTGACTTTCACCTTCAAGAGCACGACCTAG 546 0.4707 MAPRRIEMLLSMSLVMALWGVTLAQSQSSCTNVFISLSPCLDYVTGNASTPSSSCCSQLALVVRSQPLCLCEVVNGGASSIAASFNINQTRALALPTSCNVQTPPISTCSASASSSQGVSVSNFPNSPSGIGSNTVSSTTGGSRSVGGSYHENSSSTKLPCSLLVMFVLATTLTFTFKSTT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02780 181 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Pumo5g02780 181 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Pumo5g02780 181 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Pumo5g02780 181 MobiDBLite consensus disorder prediction 120 156 - -
Pumo5g02780 181 Gene3D - 27 109 IPR036312 -
Pumo5g02780 181 SMART aai_6 30 109 IPR016140 -
Pumo5g02780 181 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 15 152 IPR043325 -
Pumo5g02780 181 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 112 IPR036312 -
Pumo5g02780 181 CDD AAI_LTSS 37 101 - -
Pumo5g02780 181 Pfam Probable lipid transfer 15 109 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02780 Pumo-Chr5 74711766 74713725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02780 5 167 Lipid Metabolism Gene Families AT3G22600 43.713 1.41e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02780 - - gmx:100789510 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02780 5 74711766 74713725 Pumo5g02780 5 74711766 74713725 ECH
Pumo3g02361 3 35905214 35906710 Pumo5g02780 5 74711766 74713725 PCT