Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02707 ATGGACGACGTCGCTTTGTACTCTCTGCTTTTCATGTGCTTCCTGCATTCCGCGCGAGCCATCTTAGACCCCAACGATTTCCTCGCTCTGCAATCGATTCGCAAGTCCCTTCACGATGTTCCCGGTTCCAATTTCTTCTCCTCCTGGGACTTCACCGCCGACCCCTGCAACTTCGCCGGCGTTTTCTGCGCCAACGACAAAGTCATCGCGCTCAACCTCGGCGACCCCAGGGCCGGTTCCCCCGGTCTCACCGGAAAACTAGACCCTTCGATTTCAAAACTCTCTGCTCTCGTCGACTTCACCGTCGTTCCGGGAAGAATCTACGGTCCTCTCCCTCAGTCTCTCTCTCAATTGAAGAACCTTCGCTTCCTCGGCGTCAGCAGGAACTTCATCTCCGGCGCGATTCCGGCAGGTCTAGGTCAGCTCCGCAACATCAGAACCATCGATCTCAGCTACAACCAACTCACCGGAACAATCCCTCCGTCCATCGGAACCTTGCCGGAGCTAACCAACCTGTTCCTCTGCCACAACCGTCTCACCGGTTCGGTTCCCTCGTTCGCTTCGTCCTATTCCCTAATCCGCCTCGAACTCAAACACAACACTCTCTCCGGTTCCCTCGCACCGGACTCGCTCCCTCCTTCCCTACAGTACCTCTCTCTATCATGGAACCGGCTCACCGGCCCCGTGGACCGCCTCGTAACCCGGCTCAACCGGCTCAACTTCCTGGACCTTAGTTTGAACCACTTCACAGGCCCAATCCCGGCCCAAATATTCTCATTCCCTCTCACCAACCTCCAACTCGAAAGAAACCAATTCTCCGGCCCGGTCCAACCGTTTAATGAGGTGACGATCCAGACCGTTGATCTCAGCTACAACCGGCTATCCGGTGAGGTGTCGCCCATGCTAGCGAGCGTGCAGAACCTGTACCTGAACAACAACGGGTTCTCGGGGCAGGTTCCGGGCAGCTTCGTGGAGCGGTTGCTGGCGGCGGGCATTCAAATACTGTATTTGCAGCACAATTTTCTGACCGGAATTGCGATTAACCCGACGGCGGAGATTCCGGTGAGCAGCTCCCTGTGTTTGCAGTATAACTGCATGGTGCCACCCGTTCAAACGGCGTGCCCCTTTAACGCTGGCAAGCGGAAAATAAGGCCAGCTCAGCAGTGTAACCGCCGCTAA 1179 0.564 MDDVALYSLLFMCFLHSARAILDPNDFLALQSIRKSLHDVPGSNFFSSWDFTADPCNFAGVFCANDKVIALNLGDPRAGSPGLTGKLDPSISKLSALVDFTVVPGRIYGPLPQSLSQLKNLRFLGVSRNFISGAIPAGLGQLRNIRTIDLSYNQLTGTIPPSIGTLPELTNLFLCHNRLTGSVPSFASSYSLIRLELKHNTLSGSLAPDSLPPSLQYLSLSWNRLTGPVDRLVTRLNRLNFLDLSLNHFTGPIPAQIFSFPLTNLQLERNQFSGPVQPFNEVTIQTVDLSYNRLSGEVSPMLASVQNLYLNNNGFSGQVPGSFVERLLAAGIQILYLQHNFLTGIAINPTAEIPVSSSLCLQYNCMVPPVQTACPFNAGKRKIRPAQQCNRR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02707 392 Pfam Leucine rich repeat 167 225 IPR001611 GO:0005515
Pumo5g02707 392 FunFam Nuclear pore complex protein NUP107 24 185 - -
Pumo5g02707 392 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Pumo5g02707 392 Pfam Leucine Rich Repeat 144 164 IPR001611 GO:0005515
Pumo5g02707 392 SUPERFAMILY L domain-like 35 366 - -
Pumo5g02707 392 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 390 - -
Pumo5g02707 392 Gene3D Ribonuclease Inhibitor 23 210 IPR032675 -
Pumo5g02707 392 Gene3D Ribonuclease Inhibitor 211 378 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02707 Pumo-Chr5 73634671 73636484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02707 26 370 Receptor kinase-like Gene Family AT3G51740 33.058 1.42e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02707 - - gmx:100817314 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02707 5 73634671 73636484 Pumo5g02707 5 73634671 73636484 ECH
Pumo5g02707 5 73634671 73636484 Pumo3g02295 3 35068917 35069414 PCT