Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02587 ATGGCCCTCCTCAAACACCTCCTCCTCTCATTCACCATTATCATCATTTCTTTTGTTGCTTGTTATAGCACCTTGCAAGAGGACCCACTTAGTAGTATATATGTTGATGATCCACCTTCTATTGATGATGGTGGGACATTCAAGAACTTGATCAAGCAAAGCACAGATGTTTTTAGTTTAAACAGGTTTGACAAGCCTAGATCCCTTAAAAAGGTTAATGTCAATGATTATGGAGCTAAGGGGAATGGTGATACTGATGACACAGAGGCTTTCAAGAAGGCTTGGGATGTAGCATGTTCTTCTGGGGATGCAATTCTTGTGGTGCCTGAGGAGAATTATCTGCTCAAACCAATCAGATTCTCTGGCCCTTGCGAACCTAACGTTGAAGTTCAGATTTCTGGAACCCTTGAAGCATCAGATGATCGATCAGATTACGAGGAAGACAGCAGACACTGGCTTGTATTTGACAATATTAAGAAACTCTTTGTTTATGGTGGTGGAACCATCGATGGAAACGGCAACATGTGGTGGAAAAACTCATGCAAAAGGAAAAAAAAGCTCCCTTGCAAGGATGCCCCAACGGCTCTGACTTTCTATAATTGCGAGGACTTGATAGTTGAGAACTTGAGCATACAAAATGCTCAACAAATCCACGTTTCATTCGAGGACTCCGTGAATGTTCAGGCTTCTGGCCTTAACGTGACCGCACCAGAGGATAGCCCCAACACCGATGGGATTCATGTCACCAATACGCAAAACATCCAAATCTCAAACTCTGTTATAGGAACTGGTGATGATTGTATATCTATTGTACATGGATCTAAAGAAGTAGAAGCCACAGACATTACCTGTGGACCCGGCCATGGTATCAGTATTGGAAGCTTAGGGGCCGGAAAATCCAAGGAAATTGTTTCAGGAATACGAGTGAATAGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGCGACATCCAGTTTCAGAACATTGAAATGGACAACGTGACCAACCCCATAATAATAAATCAGAATTACTGTGATAAGAAAAAGAAGCGATGCAGAAAACTGCTCTCGAAGAAATCTGCGATACAAATCAAGAATGTGTTGTACCAGAACATAACGGGCACAAGTGCTTCTGATATAGCTGTGAAGTTTGATTGCAGCGACAAATTTCCATGCCAAGAGGTAGTGTTGCATAACATAGACCTCGAATGTGAAGGAGGAGATGATGCAGAGGCTATGTGTAACAATGTTGAATTGTCTTACTTAGGACACGTTAGGCCTCGTTGCAACTCAGAAAAGAAGAGAAAGACATTTGCTGCTATTACCTCCATTTGGAAGTACTTCTCATTGTATATATGA 1395 0.4186 MALLKHLLLSFTIIIISFVACYSTLQEDPLSSIYVDDPPSIDDGGTFKNLIKQSTDVFSLNRFDKPRSLKKVNVNDYGAKGNGDTDDTEAFKKAWDVACSSGDAILVVPEENYLLKPIRFSGPCEPNVEVQISGTLEASDDRSDYEEDSRHWLVFDNIKKLFVYGGGTIDGNGNMWWKNSCKRKKKLPCKDAPTALTFYNCEDLIVENLSIQNAQQIHVSFEDSVNVQASGLNVTAPEDSPNTDGIHVTNTQNIQISNSVIGTGDDCISIVHGSKEVEATDITCGPGHGISIGSLGAGKSKEIVSGIRVNRAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMDNVTNPIIINQNYCDKKKKRCRKLLSKKSAIQIKNVLYQNITGTSASDIAVKFDCSDKFPCQEVVLHNIDLECEGGDDAEAMCNNVELSYLGHVRPRCNSEKKRKTFAAITSIWKYFSLYI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02587 464 Pfam Glycosyl hydrolases family 28 105 430 IPR000743 GO:0004650|GO:0005975
Pumo5g02587 464 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Pumo5g02587 464 SMART pbh1 304 325 IPR006626 -
Pumo5g02587 464 SMART pbh1 251 272 IPR006626 -
Pumo5g02587 464 SMART pbh1 201 250 IPR006626 -
Pumo5g02587 464 SMART pbh1 333 354 IPR006626 -
Pumo5g02587 464 PANTHER - 71 429 - -
Pumo5g02587 464 Gene3D - 54 459 IPR012334 -
Pumo5g02587 464 FunFam Polygalacturonase QRT2 58 442 - -
Pumo5g02587 464 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Pumo5g02587 464 SUPERFAMILY Pectin lyase-like 70 445 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02587 Pumo-Chr5 71307348 71310223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02587 50 443 Glycoside Hydrolase AT2G41850 57.000 8.11e-148 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02587 K01184 - gmx:100797601 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02587 5 71307348 71310223 Pumo5g02587 5 71307348 71310223 ECH
Pumo3g02803 3 47659900 47664290 Pumo5g02587 5 71307348 71310223 PCT