Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02803 ATGGCCCTCCAAAGACATCACCTCTCATTGCTTATTATCATGATTTCTTTTGTTGCATGTCATAGCACCGTGCTAAAGGACCCACTTAGTTTCTTTGATGAGGGTACGTTGAAGGACTTTATCAAACCAAAAAGTACAAATGTTTTGAGCTTAAAGAGATTTGTCAAATTGGGTGACATTTCTTCTTCGCTTAAAACGGTTAACGTCAATGATTATGGAGCTCAAGGAGATGGCAAAACCGATGATACTCAGGCATTCAAGAAGGCTTGGCAAGTAGCATGTTCTTCTGGGGGAGCAGTTCTTGTGGTGCCTCAGAAGAGGAATTATCTACTCAAGCCAATCACTTTTTCTGGCCCTTGCAAATCCGGCATCGCAGTCCAGATATCTGGAAGCATTGAAGCATCAGATAAGATGTCAGATTACAGCGAAGACCGGAGACACTGGCTTATGTTCGATAGTGTTGAGAAACTATCAGTTAAAGGTGGTGGAACCATCGATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAACCAACCAAAATCTTGCATTGACTTTCTACAAGTGCAACAACTTGAGAGTGGAGGATTTGACGATAAAAAATGGGCAACAGATACAAGTTTCATTCCAAGCATCCCAGAATGTTAAAGTTTCTGGTCTCACTGTGACAGCACCGGGCAATAGCCCTAACACCGATGGAATTCATGTCACAAACACCCAAAACATTCAAATCTCAAACTCCGTTATAGGAACTGGTGATGATTGTATATCAATTGTAAGTGGATCCGAGAATGTACTAGCCACAGACATAACCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGGCTGGGGAATCCAAGGAATTCGTTTCAGGAATAATGGTGAAAGGAGCTAAGTTGTCTGGAACTACAAATGGAATTAGAATTAAGACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATGCAGTTTCAGAACATTCAAATGGACAATGTGACCAACCCCATCATAATTGATCAAAACTACTGTGATCAAGACACACCATGCGAAAAACAAAAATCTGCAGTTCAGATTAGGAATGTGTTGTACCAAAACATAAAGGGCACAAGTGCTTCTAATGTGGGTGTGCAATTTGATTGCAGCAAGAACTTTCCATGCAAGGGGATAGTGTTGCAGAACATAGAGCTGCAGCATGTAGGTGGAGGAGGGGCCAAGGCTTCATGCAACAGTGTTAAATTGTCCTACAGAGGAGATGTTAACCCTCACTGTCCATAG 1284 0.4268 MALQRHHLSLLIIMISFVACHSTVLKDPLSFFDEGTLKDFIKPKSTNVLSLKRFVKLGDISSSLKTVNVNDYGAQGDGKTDDTQAFKKAWQVACSSGGAVLVVPQKRNYLLKPITFSGPCKSGIAVQISGSIEASDKMSDYSEDRRHWLMFDSVEKLSVKGGGTIDGNGNIWWQNSCKTNQNLALTFYKCNNLRVEDLTIKNGQQIQVSFQASQNVKVSGLTVTAPGNSPNTDGIHVTNTQNIQISNSVIGTGDDCISIVSGSENVLATDITCGPGHGISIGSLGAGESKEFVSGIMVKGAKLSGTTNGIRIKTWQGGSGSASNMQFQNIQMDNVTNPIIIDQNYCDQDTPCEKQKSAVQIRNVLYQNIKGTSASNVGVQFDCSKNFPCKGIVLQNIELQHVGGGGAKASCNSVKLSYRGDVNPHCP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02803 427 Gene3D - 59 423 IPR012334 -
Pumo3g02803 427 FunFam Polygalacturonase QRT2 53 427 - -
Pumo3g02803 427 SUPERFAMILY Pectin lyase-like 64 426 IPR011050 -
Pumo3g02803 427 PANTHER - 65 412 - -
Pumo3g02803 427 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Pumo3g02803 427 SMART pbh1 240 261 IPR006626 -
Pumo3g02803 427 SMART pbh1 293 314 IPR006626 -
Pumo3g02803 427 SMART pbh1 389 411 IPR006626 -
Pumo3g02803 427 SMART pbh1 322 343 IPR006626 -
Pumo3g02803 427 SMART pbh1 190 210 IPR006626 -
Pumo3g02803 427 SMART pbh1 213 239 IPR006626 -
Pumo3g02803 427 ProSitePatterns Polygalacturonase active site. 270 283 IPR000743 GO:0004650|GO:0005975
Pumo3g02803 427 Pfam Glycosyl hydrolases family 28 100 415 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02803 Pumo-Chr3 47659900 47664290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02803 62 426 Glycoside Hydrolase AT3G07970 57.333 2.00e-149 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02803 K01184 - gmx:100816917 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02803 3 47659900 47664290 Pumo3g02803 3 47659900 47664290 ECH
Pumo3g02803 3 47659900 47664290 Pumo5g02587 5 71307348 71310223 PCT