Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01437 ATGGAAGAAACAAAGTTGAGTTGCTTCAAAGACGAAAGATGGTCACTCCATGGCATGACAGCTCTAGTTACAGGAGGCACACGAGGCATAGGGTACGCAATAGCAGAAGAGTTGGCAGAATTTGGGGCAGCTGTGCATATATGTTCACGTAATCAACAAGATATTGATAAATGTTTGGAAGAATGGAATAAAAGAGGGTTTCGAATGACAGGGTCGGCATGTGATGTACTATCTCGTGATCAACGTGAAAATTTAATGAAAAATGTTTCCTCAATCTTTCACGGAAAGCTCAACATTCTGATAAACAATGCTGGAACAAATACACCCAAGAGCCTAATAGATTATACTGCAGAAGATGTAAGTACAATGATGGGAACTAATTTTGAGTCTAGTTACCACCTATGTCAACTAGCACATCCACTTCTAAAAGCATCTGGATATGGAAGCATAGTATTCATATCCTCCATTGCAGGTCTTAAAGCTTTGCCGTTTTGTTCTGTGTATGCATCCTCTAAAGGAGCTATGAATCAATTCACCAAGAACATAGCATTGGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTAGCACCTGGACTTGTTAAGACCTTACTTTTGGAGGCTCCCTTGAAATTTGTTGATGAAGGGGATAAAATGGTTGAGGCTATGATATCTCAAACACCGGCTGGTCGCATTGGAGAACCTAAGGACATATCAGCATTGGTTGCTTTCCTTTGCCTTCCAGCTGCTTCATACATCACTGGACAGATTATAACTGCAGATGGGGGCTACATAATTTAA 801 0.4057 MEETKLSCFKDERWSLHGMTALVTGGTRGIGYAIAEELAEFGAAVHICSRNQQDIDKCLEEWNKRGFRMTGSACDVLSRDQRENLMKNVSSIFHGKLNILINNAGTNTPKSLIDYTAEDVSTMMGTNFESSYHLCQLAHPLLKASGYGSIVFISSIAGLKALPFCSVYASSKGAMNQFTKNIALEWAKDNIRANAVAPGLVKTLLLEAPLKFVDEGDKMVEAMISQTPAGRIGEPKDISALVAFLCLPAASYITGQIITADGGYII 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01437 266 Gene3D - 3 266 - -
Pumo5g01437 266 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 19 189 - -
Pumo5g01437 266 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Pumo5g01437 266 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Pumo5g01437 266 PRINTS Glucose/ribitol dehydrogenase family signature 228 248 IPR002347 -
Pumo5g01437 266 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Pumo5g01437 266 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Pumo5g01437 266 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Pumo5g01437 266 Pfam Enoyl-(Acyl carrier protein) reductase 27 264 - -
Pumo5g01437 266 PANTHER TROPINONE REDUCTASE 12 264 IPR045000 GO:0016491
Pumo5g01437 266 FunFam Short-chain dehydrogenase reductase 5 266 - -
Pumo5g01437 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 265 IPR036291 -
Pumo5g01437 266 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Pumo5g01437 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Pumo5g01437 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Pumo5g01437 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01437 Pumo-Chr5 37874510 37881880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01437 13 263 Miscellaneous Gene Families AT2G29150 56.972 8.41e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01437 K08081 - gmx:100306108 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01437 5 37874510 37881880 Pumo5g01437 5 37874510 37881880 ECH
Pumo1g00182 1 2910713 2915559 Pumo5g01437 5 37874510 37881880 ECH