Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00182 ATGGCAGCTGCAGAGAACAGTAGCAACACCCACAAAACTTCAAGATGGTCCCTTAACGGAATGACTGCTCTTGTCACCGGTGGAACTCGTGGAATTGGGCATGCCATAGTGGAGGACTTATGTGGGTTTGGTGCCACTGTCCACACTTGTTCCAGGAACCAAGCTGAATTGGATAAGTGTTTAGCTGAATGGCGTAGTAAGGGGTTTTTGGTTTCTGGGTCTGTGTGTGATGTCTCATCTCAACCCCAGAGAGAGAAGCTCATTCAGGAAGTCACTTCCCTCTTCAATGGCAAGCTTAACATTTATGTGAACAATGTTGGAGTAAACTATAGGAAGCCCACTATTGAGTACACTGCTGAAGTATATTCACAAATTATGGCAGTCAATTTAGACTCTGCTTACCATCTGTGCCAACTTGCATATCCTCTTCTGAAAGCATCTGGAATGGGAAGCATTGTCTTCATTTCATCTATTGCTGGCGTGGTCAGCTTAGGTACTGGATCTGTCTATGCAGCATGTAAAGCTGCGATCAATCAGCTTACAAAATATATGGCTTGTGAATGGGCTAAAGACAACATAAGGAGCAATTGTGTTGTTCCTGCTACTACCAATACACCACTTGTTGAACATCTACTTCGCAACAAGAAGTATGTAGAAGAAATGTTATCTCGAACTCCTCTTTGGCGCATCGCAGAACCTCAAGAAGTTTCTTCCTTGGTGGCTTACCTTTGTCTGCCTGCTGCCTCCTACATCACAGGACAGGTTGTTCTTGTTGATGGAGGATTATCAGTGAATGGATTTCAACCCAGCATGAGAATAACATGA 825 0.44 MAAAENSSNTHKTSRWSLNGMTALVTGGTRGIGHAIVEDLCGFGATVHTCSRNQAELDKCLAEWRSKGFLVSGSVCDVSSQPQREKLIQEVTSLFNGKLNIYVNNVGVNYRKPTIEYTAEVYSQIMAVNLDSAYHLCQLAYPLLKASGMGSIVFISSIAGVVSLGTGSVYAACKAAINQLTKYMACEWAKDNIRSNCVVPATTNTPLVEHLLRNKKYVEEMLSRTPLWRIAEPQEVSSLVAYLCLPAASYITGQVVLVDGGLSVNGFQPSMRIT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00182 274 FunFam Short-chain dehydrogenase reductase 7 267 - -
Pumo1g00182 274 Pfam Enoyl-(Acyl carrier protein) reductase 29 263 - -
Pumo1g00182 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 IPR002347 -
Pumo1g00182 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 IPR002347 -
Pumo1g00182 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 IPR002347 -
Pumo1g00182 274 PANTHER TROPINONE REDUCTASE 15 266 IPR045000 GO:0016491
Pumo1g00182 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 264 IPR036291 -
Pumo1g00182 274 Gene3D - 2 267 - -
Pumo1g00182 274 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Pumo1g00182 274 PRINTS Glucose/ribitol dehydrogenase family signature 191 208 IPR002347 -
Pumo1g00182 274 PRINTS Glucose/ribitol dehydrogenase family signature 22 39 IPR002347 -
Pumo1g00182 274 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Pumo1g00182 274 PRINTS Glucose/ribitol dehydrogenase family signature 170 189 IPR002347 -
Pumo1g00182 274 PRINTS Glucose/ribitol dehydrogenase family signature 97 108 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00182 Pumo-Chr1 2910713 2915559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00182 15 269 Miscellaneous Gene Families AT2G29290 61.868 5.14e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00182 K08081 - gmx:100775806 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00182 1 2910713 2915559 Pumo1g00182 1 2910713 2915559 ECH
Pumo1g00182 1 2910713 2915559 Pumo5g01437 5 37874510 37881880 ECH