Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01031 ATGGCCAGCTTGAAGGTTGCATGCGTGGTGGTGATGTTAATGGCTGTGGTGGGTGCACCAATGATGGTGCAAGTGCAAGCCATGACATGCGGTGATGTGACGGTGAACCTGGCACCCTGCCTATCTTACCTGATGCAGGGTGGAGAGCCTTCAACCGGGTGCTGTAACGGAGTGAAGAACATGCTCGGCGCCGCCGGCACCACCGCCGACAAACAAACCGTCTGCAACTGCCTTAAGGATGATGCCAATAGGTACAACATCAACGACCAGTACGCTCAGGCACTCCCTGGCCTCTGCAATGTCAGCGTCCCTTACAGGATCAGCCGCTCCACCAACTGCGACGCCATCAATTAA 354 0.5593 MASLKVACVVVMLMAVVGAPMMVQVQAMTCGDVTVNLAPCLSYLMQGGEPSTGCCNGVKNMLGAAGTTADKQTVCNCLKDDANRYNINDQYAQALPGLCNVSVPYRISRSTNCDAIN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01031 117 SMART aai_6 30 113 IPR016140 -
Pumo5g01031 117 CDD nsLTP1 29 114 - -
Pumo5g01031 117 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 114 IPR000528 GO:0006869|GO:0008289
Pumo5g01031 117 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Pumo5g01031 117 PRINTS Plant phospholipid transfer protein signature 70 85 IPR000528 GO:0006869|GO:0008289
Pumo5g01031 117 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Pumo5g01031 117 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Pumo5g01031 117 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
Pumo5g01031 117 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Pumo5g01031 117 Gene3D - 27 117 IPR036312 -
Pumo5g01031 117 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 115 IPR036312 -
Pumo5g01031 117 Pfam Protease inhibitor/seed storage/LTP family 30 113 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01031 Pumo-Chr5 23072239 23088628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01031 4 116 Acyl Lipid Metabolism Gene Families AT2G38530 42.609 2.54e-24 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01031 - - gmx:100798112 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01031 5 23072239 23088628 Pumo7g01710 7 45154017 45155705 PCT