Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00565 ATGGATTGTTGGTCCTCTCCTCTCCCTCTCCATGATGAATTCGAGAAACTTGTCATTCGAATGAACCCTCCCAGAGTTGCTGTGGATAACATTTCAAGCATAACAGACACTGTGATAAAGGTTGATAGCGCAAACAGGCGTGGCAGCTTGTTGGAGGTGGTTCAGGTTCTCACTGATATGAATCTCAGTGTTAGAAGAGCTTACATTTCCTCTGATGGAGAATGGTTCATGGATGTTTTTCATGTCACGGATCAAAATGGGAAAAAGTTTCTTCAAGATGATGTAGCTGACCGTATTCAACAGTCACTGGGTCCAAGAGCCTCTAGTTTTCGATCCTTGAGAAGGTCTGTTGGGGTCCAAGCTGAAGCAGAACATACAACCATTGAATTAACTGGAAGAGACAGGCCAGGATTGCTTTCAGAAGTGTTTGCTGTTCTTGCAGACCTCAAATGCAATGTGGTAGCAGCAGAAGTCTGGACCCACAATTCAAGAATGGCATCTGTTGTTTACATCACAGATGAGGCGACGGGATTGTCCATCGACAATCCAGATCGCCTTGCTAAGATTAAGCAACTTCTACTTTATGTTCTGAAAGGAGACATAGATAAGAAGAGTGCCAACACTGCTGTTTCTGTTGGTTCTACTCACAAGGATAGGAGGCTGCATCAGTTGATGTATGCCGACCGTGATTATGACATAGATGATGGGGATTCTGGCTCAACAAGTGACAGGAACAAGCTCCTTGTAACTGTTGATGATTGCATAGATAAGGGATACACTGTTGTGAACTTGAGGTGTCCAGACAGACCGAAGTTACTGTTTGATACCGTGTGTACACTCACTGACATGCTGTATGTTGTGTACCATGGAACTGTCATTGCTGAAGGACCAGAGGCATATCAGGAATATTATATAAGGCATGTGGATGGAAGTCCTATCAGTTCTGAAGCAGAAAGGCAAAGAGTGATTCATTGTTTGGAGGCTGCTGTTAGGAGACGAACTTCTGAGGGTATAAAGCTAGAACTATGTGGGGAAGACAGGGTTGGCCTTTTGTCTGATGTAACTCGCATCTTTAGAGAAAATGGTCTTTCAGTCAACCGTGCTGAAGTTACAACCAGGGGCACCCAAGCCATGAATGTTTTCTATGTGACTGATGTATCTGGAAATCCAGTTAAGAGTGAAACAATTGAAGCAGTTCGAAAAGAGATTGGCTTGACCATACTGCAAGTAAAAGATGATGTCTGCTCAAAACCTCCACCCCAAGAGAGTGGAAAATTCTCATTGTCTAATCTCTTTCGGTCAAGCTCTGAGAAATTTCTCTACAACTTGGGTCTGATGAAGTCTTATTCTTGA 1353 0.4339 MDCWSSPLPLHDEFEKLVIRMNPPRVAVDNISSITDTVIKVDSANRRGSLLEVVQVLTDMNLSVRRAYISSDGEWFMDVFHVTDQNGKKFLQDDVADRIQQSLGPRASSFRSLRRSVGVQAEAEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEATGLSIDNPDRLAKIKQLLLYVLKGDIDKKSANTAVSVGSTHKDRRLHQLMYADRDYDIDDGDSGSTSDRNKLLVTVDDCIDKGYTVVNLRCPDRPKLLFDTVCTLTDMLYVVYHGTVIAEGPEAYQEYYIRHVDGSPISSEAERQRVIHCLEAAVRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVNRAEVTTRGTQAMNVFYVTDVSGNPVKSETIEAVRKEIGLTILQVKDDVCSKPPPQESGKFSLSNLFRSSSEKFLYNLGLMKSYS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00565 450 Gene3D - 337 412 - -
Pumo5g00565 450 Pfam ACT domain 341 398 IPR002912 -
Pumo5g00565 450 Pfam ACT domain 37 86 IPR002912 -
Pumo5g00565 450 Pfam ACT domain 126 174 IPR002912 -
Pumo5g00565 450 CDD ACT_ACR_4 337 408 - -
Pumo5g00565 450 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 11 411 IPR040217 -
Pumo5g00565 450 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
Pumo5g00565 450 SUPERFAMILY ACT-like 37 104 IPR045865 -
Pumo5g00565 450 ProSiteProfiles ACT domain profile. 38 118 IPR002912 -
Pumo5g00565 450 CDD ACT_ACR_2 126 199 - -
Pumo5g00565 450 ProSiteProfiles ACT domain profile. 339 417 IPR002912 -
Pumo5g00565 450 CDD ACT_ACR_3 259 333 - -
Pumo5g00565 450 SUPERFAMILY ACT-like 335 404 IPR045865 -
Pumo5g00565 450 SUPERFAMILY ACT-like 124 193 IPR045865 -
Pumo5g00565 450 Gene3D - 125 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00565 Pumo-Chr5 11361126 11364079 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00565 - - gmx:100798999 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00565 5 11361126 11364079 Pumo5g00565 5 11361126 11364079 ECH
Pumo5g00565 5 11361126 11364079 Pumo4g01614 4 20384752 20388084 ECH