Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00282 ATGATGAATTATTGTGTAGAGCCAGGAGAGTACGTTGTTCGTGAGGGAGAACGTGGGGATGGTCTTTACCTCATCTGGGAGGGAGAGGCTGAGGTTGTTGGCTCTGTTAGCGCCGATGATGATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGCTTTGGTTTATCAAATGAAGTTCACCATGCTGATGTCGTAGCTTTGACAAAGTTATCATGCTTGGTGCTGCCCCATGAACACTCAGCATTGCTGCAGCCGAAGTCTATCTGGAATGCAGAAAAATCTCATGATACATGCTCACTTGTGGAGCATATATTGCATTTGGAACCTATAGAGGTGGATATCTTCCGAGGAATCACTCCTCCAGATGCTCCAAAATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCGTAAAGTTGTTCATAGCTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACATACCCATTATATATCAAGTTACGCGTCTCCGTGATGGGAAGAGTTTTGCCACAAGGAAAGTGGATGCAATTCAAAAGGGAACTGTCATATTCACTTTGCTGGCTTCATTCCATAAGGAAGAAGTTGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATAAGCTTTTATCGTTGGAAGAGCTTCGGGAGCAACGTCTTACTGACCCTCGTCTTCCACGAACTTACCGGAACAAGGTTGCTTCAATTGAATTCATTCCCTGGCCCATAGAGATACGGTTCTGTGAACCTAAAACTTCAACAAATCAGACCAAATCTCCTCCTAGTTTGAGATACTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATCAAGCCTTGCATAGGTGTGTTGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTGAACCCCAACCGTAGGAAGGGCATGAAAGCACGTGCTGTGAGTCTGGACCACTCCATGTGGTTTCACAGACCTTTAAGAGCTGATGACTGGGTGCTATTTGTGATCTTTAGTCCTACTTCCTATAATGCCCGCGGCTATGTCACTGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCAGTGGTTCAAGAAGGTGTAATGAGGGAAGTTATTTCTGCAAAGTCACCCATCAAATCTAATCTGTGA 1200 0.4367 MMNYCVEPGEYVVREGERGDGLYLIWEGEAEVVGSVSADDDNHPEFQLKRYDYFGFGLSNEVHHADVVALTKLSCLVLPHEHSALLQPKSIWNAEKSHDTCSLVEHILHLEPIEVDIFRGITPPDAPKFGKVFGGQIVGQALAAASKSVDCRKVVHSLHVYFLLVGDFNIPIIYQVTRLRDGKSFATRKVDAIQKGTVIFTLLASFHKEEVGFHHQEVSIPSVPAPDKLLSLEELREQRLTDPRLPRTYRNKVASIEFIPWPIEIRFCEPKTSTNQTKSPPSLRYWFRARGKLSDDQALHRCVVAYTSDLIFLQVSLNPNRRKGMKARAVSLDHSMWFHRPLRADDWVLFVIFSPTSYNARGYVTGQMFNQKGELLVSVVQEGVMREVISAKSPIKSNL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00282 399 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 12 28 IPR018488 -
Pumo5g00282 399 PANTHER ACYL-COA THIOESTERASE 86 387 IPR003703 GO:0006637|GO:0047617
Pumo5g00282 399 ProSiteProfiles cAMP/cGMP binding motif profile. 1 55 IPR000595 -
Pumo5g00282 399 CDD CAP_ED 5 82 IPR000595 -
Pumo5g00282 399 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 218 386 IPR029069 -
Pumo5g00282 399 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 103 210 IPR029069 -
Pumo5g00282 399 CDD Thioesterase_II_repeat2 116 208 - -
Pumo5g00282 399 Pfam Thioesterase-like superfamily 130 385 - -
Pumo5g00282 399 Pfam Cyclic nucleotide-binding domain 6 81 IPR000595 -
Pumo5g00282 399 FunFam Acyl-CoA thioesterase II 99 389 - -
Pumo5g00282 399 CDD Thioesterase_II_repeat1 283 385 - -
Pumo5g00282 399 NCBIfam acyl-CoA thioesterase II 108 386 IPR003703 GO:0006637|GO:0047617
Pumo5g00282 399 SUPERFAMILY cAMP-binding domain-like 5 82 IPR018490 -
Pumo5g00282 399 Gene3D Jelly Rolls 2 95 IPR014710 -
Pumo5g00282 399 Gene3D - 99 388 IPR042171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00282 Pumo-Chr5 6370038 6376815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00282 9 399 Acyl Lipid Metabolism Gene Families AT1G01710 67.775 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00282 K01068 - gmx:100813197 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00282 5 6370038 6376815 Pumo5g00282 5 6370038 6376815 ECH
Pumo5g00282 5 6370038 6376815 Pumo7g00843 7 14907649 14916518 PCT