Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00264 ATGTCAGAAATTGACATGGCGGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATCCAACAAGTGGAACAAGAAATTGCAATGTATTGCCCTCTGATTTGTCAAGAAATAATACAAAAAGGCATGGGATCTTCGAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCAACGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCTAACAAGGAACGGAAGTCTTATGATGAGAAATTCGTTAGGATGGATACAAAGCGGCTCTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACAAGTCGCGCACTTGCTCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGCGAGATATTTCATCTGCCTGATGATCTTACTGAGGAAGAGAAGTTGGAGCCCTTGAAAAACACAACCGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAAAAGAGGAAAGAACTAAAAGAGCGTGAGAGGTTAAAGAATGTTGAAGTTGAAGAAGAGCATGTAGATGAACGCTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGAAAAAAAGAGCAACAACAGAAGAACTCTTCTCTGAAGGAAGCTTCTGAAGTGAATAAGGAAGTAAATGGTCAAAATATCAGACACCAAAGTGCTGAAGCTGATAGAACTGCTGAGACCTCAAATTCACATACAGAAGACGTTTTTTATCATAAAGAGTTCGATGATGGAGATATAGATGATGGGATTGATCCTGCACTAAAGGAAAAAATCGACAGGGAAGTGGAAGATTTTGCCCGCCGATTGAATTCTGACTGGCCAGAGAGGATGCAAGAACTTTTATCATCAGGACAAGAAAGGAAGACAATGCTTTTTACTCCCAATGGAAATAGTTTTCTGAGGCGAAATGCTTGA 1041 0.3948 MSEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICQEIIQKGMGSSKNCAICLPQQVSPATLSLILDYCRFHQVPGRSNKERKSYDEKFVRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDERSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQQKNSSLKEASEVNKEVNGQNIRHQSAEADRTAETSNSHTEDVFYHKEFDDGDIDDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTMLFTPNGNSFLRRNA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00264 346 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Pumo5g00264 346 Coils Coil 224 250 - -
Pumo5g00264 346 Coils Coil 170 190 - -
Pumo5g00264 346 MobiDBLite consensus disorder prediction 240 260 - -
Pumo5g00264 346 SUPERFAMILY POZ domain 16 80 IPR011333 -
Pumo5g00264 346 MobiDBLite consensus disorder prediction 326 346 - -
Pumo5g00264 346 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Pumo5g00264 346 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Pumo5g00264 346 PANTHER SKP1 14 155 IPR016897 GO:0006511
Pumo5g00264 346 MobiDBLite consensus disorder prediction 206 273 - -
Pumo5g00264 346 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Pumo5g00264 346 SMART skp1_3 15 116 IPR001232 GO:0006511
Pumo5g00264 346 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00264 Pumo-Chr5 6107871 6118268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00264 - - gmx:100809439 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00264 5 6107871 6118268 Pumo5g00264 5 6107871 6118268 ECH
Pumo7g00816 7 14334780 14339881 Pumo5g00264 5 6107871 6118268 ECH
Pumo5g00264 5 6107871 6118268 Pumo7g00816 7 14334780 14339881 PCT