Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00071 ATGATAAACTTGCAAGACAACCACAATAATAACAATTTTCCGTCCATGCAATCATCAAAACTTGGGAAAAGGTGGAAGGAGTACCATGGCATGAGCAATTGGGACGGTTTGCTAGACCCATTAGACGACAATTTACGTGCTGAAATCCTAAGGTACGGTCATTTCGTGGAAACTGCGTACAAATCCTTCGAGTTTGACCCTTCCTCTCCCAACTATGCAAACTCCAGGTTCCCCAAAAAAGCGCTTTTAGAACGGTGTGGTTTACCTAACACGGGCTACAAGGTAACCAAATACCTACGTGCAACCTCGGGGATTCAGCTTCCTAGTTGGGTGGACAAGGCACCAACGTGGGTAGCAAAACAATCGAGCTATGTTGGGTACGTTGCGGTGTGTCATGACAAGGAAGTGATCAAAAGGCTTGGTCGGCGCGATGTTGTTGTGGCATATAGAGGAACCACCACATGCTTGGAATGGTTGGAGAATTTTCGTGCATCTCTCACCAACCTCCCTATTCCATGCAGTCCAAAAAGGGCCTTTGAAAAAAATGGGGTCATGGACGGAAGTGGGGCCATGGTGGAAAGAGGGTTCTTGAGTCTCTACACCTCGTCACTTCCTGCAAAAACTATGTCATCTTTACAGGAAATGGTGAGGCGAGAGATCTCAAGGATCCTCCAAACCTACCGCGGGGAGCAAGTGAGCCTGACCGTCACCGGTCACAGTCTGAGGGGCGGCATTGGCCACGCTGACCGCCTTGAGAGGCAGGGGACTAAGGTTTTGCGCATAGTGAACTCCGAGGATGTCATCACCAAGGTTCCGGGGTTTGTGTTTGATGATGACGTGGCGAGAGGTGGTGGGGTCCACGTGGCGGGGTTCCCGAGCTGGATACAGAAGAGGGTGGAGGAGGCACAGTTGGTGTACGCGGAGGTTGGGAGGGAACTGCGGTTATGTAGCAGGGATTCTCCGTACCTAGGAAACACGAATGTTGCCACGTGTCACGAGCTGAACACGTATCTGCACCTCGTTGATGGCTTTGTCAGCTCCACATGTCCCTTCAGAGCCTCCGCAAAGAGGTTCCTCCGGCGATGA 1086 0.512 MINLQDNHNNNNFPSMQSSKLGKRWKEYHGMSNWDGLLDPLDDNLRAEILRYGHFVETAYKSFEFDPSSPNYANSRFPKKALLERCGLPNTGYKVTKYLRATSGIQLPSWVDKAPTWVAKQSSYVGYVAVCHDKEVIKRLGRRDVVVAYRGTTTCLEWLENFRASLTNLPIPCSPKRAFEKNGVMDGSGAMVERGFLSLYTSSLPAKTMSSLQEMVRREISRILQTYRGEQVSLTVTGHSLRGGIGHADRLERQGTKVLRIVNSEDVITKVPGFVFDDDVARGGGVHVAGFPSWIQKRVEEAQLVYAEVGRELRLCSRDSPYLGNTNVATCHELNTYLHLVDGFVSSTCPFRASAKRFLRR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00071 361 CDD Lipase_3 94 279 - -
Pumo5g00071 361 Gene3D alpha/beta hydrolase 246 360 IPR029058 -
Pumo5g00071 361 Gene3D alpha/beta hydrolase 24 245 IPR029058 -
Pumo5g00071 361 Pfam Lipase (class 3) 146 244 IPR002921 GO:0006629
Pumo5g00071 361 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 247 357 - -
Pumo5g00071 361 SUPERFAMILY alpha/beta-Hydrolases 109 276 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00071 Pumo-Chr5 2876664 2877840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00071 20 361 Acyl Lipid Metabolism Gene Families AT2G44810 59.249 1.14e-152 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00071 K16818 - gmx:100800549 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00071 5 2876664 2877840 Pumo5g00071 5 2876664 2877840 ECH
Pumo7g01933 7 51353479 51354864 Pumo5g00071 5 2876664 2877840 PCT