Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04161 ATGGTTATGTGCTTGAAGCTCATAATGTGGAATGTGGCACTGCTTCTGGTTTTTACTCTCATTGGTTCTGCTAAGGCCTCAGTCTCCTATGACTCTAAGGCTATCACCATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTATCCAAGGAGCACCCCTCAGATGTGGCCAGATCTTATTCAAAAGGCCAAGGATGGAGGTTTGGATGTGATTCAGACTTACGTTTTCTGGAATGGACACGAACCTTCACCTGGAAAATATTATTTTGAGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCAGGCCTTTATGTTCATCTCAGGATTGGCCCTTATGTCTGTGCTGAGTGGAACTTCGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGAACCATTTAAGCATCAAATGCAAAAATTTACCACGAAGATTGTTGATTTGATGAAAGCGGAGAGGTTATATGAGTCCCAGGGAGGTCCAATAATTATGTCCCAGATTGAAAATGAATATGGACCTATGGAGTATGAAATTGGTGCTGCTGGTAAAGCTTACACTAAGTGGGCAGCAGAAATGGCTATGGGACTTGGTACTGGGGTTCCATGGGTCATGTGCAAGCAAGATGACACTCCTGATCCTCTTATTAACACTTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTCGGAGGTCCTGTTCCTCATCGACCTGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTAAATTACTACATGTATCATGGAGGAACAAATTTCGGTCGAACTGCTGGTGGTCCCTTTATTGCTACAAGCTATGATTATGATGCACCACTTGATGAATATGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTGCACAGGGCAATAAAACTCTGTGAACCAGCTTTAGTATCTGGAGATCCTACTGTAACAAAGAGTGGAAGCTATCAAGAGGTTGGTTCTCAGAGTGCCCAGATGAAGATGACTCCTGTTCCTATTCATGGCGGACTCTCTTGGCTATCATTCAATGAAGAAACGACCATTACTGATGATAGTTCCTTCACCATGACTGGCCTGTTGGAGCAGTTAAATACAACAAGAGATTTATCTGACTACTTGTGGTACTCCACAGATGTTGTGCTTGATCCCAATGAAGGATTTCTGAGAAACGGAAAGGATCCTGTTCTTACTGTGTTTTCTGCTGGGCATGCTTTACATGTTTTTATAAATGGTCAGCTATCAGGAACTGCATATGGAAGCTTAGAATTCCCTAAACTGACGTTTAGCGAGGGAGTGAAGCTCAGAGCTGGTGTTAACAAGATCTCTTTTCTAAGTGTTGCAGTTGGACTCCCGAATGTTGGTCCTCATTTTGAAACATGGAATGCTGGTGTTCTTGGCCCAATTTCATTAAGTGGTCTCAATGAAGGTAGAAGGGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCTTGAGTCTTCACTCTCTCAGTGGAAGTTCCTCAGTGGAGTGGATTCAGGGATCTTTAGTTTCTCGAAGGCAGCCATTGACTTGGTACAAAACAACTTTCGACGCACCAGCTGGGACTGCACCATTGGCTTTAGACATGGACAGCATGGGCAAAGGTCAAGTGTGGTTAAATGGACAGAATCTTGGCCGCTACTGGCCTGCTTATAAAGCATCTGGTACCTGTGATTACTGTGACTATGCTGGAACTTATAATGAGAATAAATGCAGAAGTAACTGTGGCGAGGCTTCTCAAAGATGGTATCATGTTCCTCAATCGTGGCTAAAGCCAACAGGAAATTTATTGGTTGTGTTTGAAGAGCTAGGTGGAGACCCCAATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTATGTGCTGATATTTATGAGTGGCAGCCTAATCTTGTAAGCTATCAGATGCAAACTTCTGGCAAAGCACCTGTTAGACCAAAAGTTCATTTATCATGTAGCCCTGGACAGAAAATCTCATCAATCAAATTTGCTAGCTTTGGTACTCCAGTAGGTTCTTGTGGAAACTTCCATGAAGGAAGCTGTCATGCTCACAAGTCTTATGATGCCTTTGAAAGGAATTGTGTTGGACAAAACTGGTGCACAGTAACAGTGTCACCTGAAAATTTTGGAGGAGATCCATGTCCAAATGTCTTGAAGAAACTCTCAGTGGAAGCTATTTGTTCCTGA 2355 0.4297 MVMCLKLIMWNVALLLVFTLIGSAKASVSYDSKAITINGQRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKHQMQKFTTKIVDLMKAERLYESQGGPIIMSQIENEYGPMEYEIGAAGKAYTKWAAEMAMGLGTGVPWVMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPTVTKSGSYQEVGSQSAQMKMTPVPIHGGLSWLSFNEETTITDDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVLDPNEGFLRNGKDPVLTVFSAGHALHVFINGQLSGTAYGSLEFPKLTFSEGVKLRAGVNKISFLSVAVGLPNVGPHFETWNAGVLGPISLSGLNEGRRDLSWQKWSYKVGLKGETLSLHSLSGSSSVEWIQGSLVSRRQPLTWYKTTFDAPAGTAPLALDMDSMGKGQVWLNGQNLGRYWPAYKASGTCDYCDYAGTYNENKCRSNCGEASQRWYHVPQSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYQMQTSGKAPVRPKVHLSCSPGQKISSIKFASFGTPVGSCGNFHEGSCHAHKSYDAFERNCVGQNWCTVTVSPENFGGDPCPNVLKKLSVEAICS 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04161 784 Gene3D - 689 784 IPR043159 -
Pumo4g04161 784 FunFam Beta-galactosidase 391 528 - -
Pumo4g04161 784 SUPERFAMILY (Trans)glycosidases 28 344 IPR017853 -
Pumo4g04161 784 SUPERFAMILY Galactose-binding domain-like 527 693 IPR008979 -
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 590 606 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 563 577 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Pumo4g04161 784 Gene3D - 542 677 - -
Pumo4g04161 784 Gene3D Glycosidases 24 344 - -
Pumo4g04161 784 ProSiteProfiles SUEL-type lectin domain profile. 698 784 IPR000922 GO:0030246
Pumo4g04161 784 FunFam Beta-galactosidase 693 784 - -
Pumo4g04161 784 SUPERFAMILY Galactose-binding domain-like 381 518 IPR008979 -
Pumo4g04161 784 FunFam Beta-galactosidase 23 343 - -
Pumo4g04161 784 Pfam Galactose binding lectin domain 706 783 IPR000922 GO:0030246
Pumo4g04161 784 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Pumo4g04161 784 PANTHER BETA-GALACTOSIDASE RELATED 18 687 IPR001944 GO:0004553|GO:0005975
Pumo4g04161 784 CDD Gal_Rha_Lectin_BGal 701 783 - -
Pumo4g04161 784 FunFam Beta-galactosidase 536 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04161 Pumo-Chr4 82307297 82313764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04161 13 784 Glycoside Hydrolase AT3G13750 73.221 0.0 1266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04161 - - gmx:100811187 1585.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04161 4 82307297 82313764 Pumo4g04161 4 82307297 82313764 ECH
Pumo4g04161 4 82307297 82313764 Pumo7g00337 7 4421428 4427103 PCT