Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04113 ATGGTAGGAAACAAATTACTATGCGTTCTTGTAGTGGTTGCCTTTGTTATGATAACGAAGGTGCCCCAAAATGTGAGTGCTCAAAACTGTGGGTGTGCTGAAGGGCTATGTTGTAGCCAATATGGGTATTGTGGCACCGGTGATGAGTACTGCGGCACAGGGTGCCAGCAGGGTCCTTGTTATGGGAGCGCCCCTAGCAACAATGTTAATGTTGCTGACATTGTCACACAAGAATTCTTCAGTGGCATAATTGATCAGGCTGACTCTAGTTGTGCTGGCAAGAGCTTTTACTCACGAGATGCTTTCCTTAATGCTCTCAATTCCTATAACCAGTTTGGTAGAGTTGGTTCTGAGGATGACTCCAAGCGCGAGATTGCAGCTGCTTTTGCTCATTTCACACATGAAACTGGACATTTTTGTCACATTGAAGAGATTGATGGTGCATCAAAGGACTATTGCGACAAGGACACGATTGCACAGTATCCGTGCTCATCCAACAAAGGCTACCATGGGCGTGGTCCGATCCAACTAACTTGGAACTACAACTATGGACAAGCAGGACAGAACAACAATTTTGATGGGTTGAACTCTCCTGAAACAGTGTCCAATGATCCAGTGCTGTCTTTCAAGACAGCATTATGGTACTGGATGCAACACGTGCGCCCTGTAATCAACCAAGGCTTTGGTGCAACCATTAGAGCCATCAATGGTCCACTTGAATGTGATGGTGCCAACCCCTCCACAGTCCAGGCTCGCGTTAATTACTACACCGATTACTGTAGACAATTGGGTGTTGCTACTGGTGATAATCTTAATTGCTAA 822 0.4574 MVGNKLLCVLVVVAFVMITKVPQNVSAQNCGCAEGLCCSQYGYCGTGDEYCGTGCQQGPCYGSAPSNNVNVADIVTQEFFSGIIDQADSSCAGKSFYSRDAFLNALNSYNQFGRVGSEDDSKREIAAAFAHFTHETGHFCHIEEIDGASKDYCDKDTIAQYPCSSNKGYHGRGPIQLTWNYNYGQAGQNNNFDGLNSPETVSNDPVLSFKTALWYWMQHVRPVINQGFGATIRAINGPLECDGANPSTVQARVNYYTDYCRQLGVATGDNLNC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04113 273 PIRSF Endochitinase 1 273 IPR016283 GO:0004568|GO:0005975
Pumo4g04113 273 FunFam Endochitinase (Chitinase) 143 203 - -
Pumo4g04113 273 Gene3D Endochitinase, domain 2 144 201 - -
Pumo4g04113 273 SMART ChitinBD_3 29 60 IPR001002 GO:0008061
Pumo4g04113 273 FunFam Endochitinase PR4 63 151 - -
Pumo4g04113 273 CDD chitinase_GH19 75 273 - -
Pumo4g04113 273 ProSitePatterns Chitinases family 19 signature 1. 91 113 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo4g04113 273 ProSitePatterns Chitinases family 19 signature 2. 207 217 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo4g04113 273 ProSiteProfiles Chitin-binding type-1 domain profile. 27 62 IPR001002 GO:0008061
Pumo4g04113 273 Gene3D - 73 273 - -
Pumo4g04113 273 FunFam Class IV chitinase 24 72 - -
Pumo4g04113 273 SUPERFAMILY Plant lectins/antimicrobial peptides 25 64 IPR036861 GO:0008061
Pumo4g04113 273 SUPERFAMILY Lysozyme-like 70 273 IPR023346 -
Pumo4g04113 273 PRINTS Chitin-binding domain signature 38 45 IPR001002 GO:0008061
Pumo4g04113 273 PRINTS Chitin-binding domain signature 30 38 IPR001002 GO:0008061
Pumo4g04113 273 PRINTS Chitin-binding domain signature 45 52 IPR001002 GO:0008061
Pumo4g04113 273 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Pumo4g04113 273 Gene3D - 24 72 IPR036861 GO:0008061
Pumo4g04113 273 CDD ChtBD1 32 56 - -
Pumo4g04113 273 PANTHER CHITINASE-RELATED 8 273 - -
Pumo4g04113 273 Pfam Chitin recognition protein 27 60 IPR001002 GO:0008061
Pumo4g04113 273 Pfam Chitinase class I 226 273 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo4g04113 273 Pfam Chitinase class I 74 219 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04113 Pumo-Chr4 81791164 81792283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04113 9 273 Glycoside Hydrolase AT3G54420 69.057 3.49e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04113 K01183 - gmx:100776582 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04113 4 81791164 81792283 Pumo4g04113 4 81791164 81792283 ECH
Pumo4g04113 4 81791164 81792283 Pumo11g01729 11 48898371 48901766 PCT