Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01729 ATGAGCAAGTTACTGAACATTCCAATTGCAGGATTTGTGGCAACCTTTGTCATCATGGTGATGATGATGGTGCCCATAAACGTGAGTGCCCAAAACATAGGTGACATCGTCACACAAGAATTCTTCAACAGCATAATCAATCAGGCTGATGCTAGTTGTGCAGGGAAGAACTTCTACTCACGCGATGCTTTCCTCAATGCTCACAATTCCTACAGTGAGTTTGGTAATCGTGGTAACCAGGATGACTCCAAGCGTGAGGTTGCAGCTGCTTTTGCCCATTTCACCCATGAAACTGGACATTTTTGCTACATAGAAGAGATTAATGGTGCATCAGGGGACTACTGTGATGAGACGAACACAGAGTACCCATGTGCCCCTAACAAAAATTACTATGGGCGTGGACCCATCCAACTATCATGGAACTTCAACTACGGACCAGCAGGGCAGAACATCGGATTTGATGGATTGAACGCACCAGAGACAGTGGCCAATGACGTTGTTGTGTCCTTCAAGACAGCATTGTGGTACTGGATGCAATTTGTGCGCCCTGTGATCAACCAGGGCTTTGGCGCAACCATTAGAGCTATCAATGGCCAACTTGAATGTGATGGTGCAAACCCTAACACTGTTCAGGCTCGTGTTAATTACTACACCCAGTATTGTTCACAACTTGGTGTTGCCCCTGGTGACAATCTCACTTGCTAA 705 0.461 MSKLLNIPIAGFVATFVIMVMMMVPINVSAQNIGDIVTQEFFNSIINQADASCAGKNFYSRDAFLNAHNSYSEFGNRGNQDDSKREVAAAFAHFTHETGHFCYIEEINGASGDYCDETNTEYPCAPNKNYYGRGPIQLSWNFNYGPAGQNIGFDGLNAPETVANDVVVSFKTALWYWMQFVRPVINQGFGATIRAINGQLECDGANPNTVQARVNYYTQYCSQLGVAPGDNLTC 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01729 234 CDD chitinase_GH19 37 234 - -
Pumo11g01729 234 Pfam Chitinase class I 187 234 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo11g01729 234 Pfam Chitinase class I 36 179 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo11g01729 234 SUPERFAMILY Lysozyme-like 33 234 IPR023346 -
Pumo11g01729 234 ProSitePatterns Chitinases family 19 signature 2. 168 178 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo11g01729 234 Gene3D Endochitinase, domain 2 107 164 - -
Pumo11g01729 234 PANTHER CHITINASE-RELATED 29 234 - -
Pumo11g01729 234 FunFam Endochitinase (Chitinase) 105 164 - -
Pumo11g01729 234 ProSitePatterns Chitinases family 19 signature 1. 53 75 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo11g01729 234 PIRSF Endochitinase 8 234 IPR016283 GO:0004568|GO:0005975
Pumo11g01729 234 Gene3D - 32 234 - -
Pumo11g01729 234 FunFam Endochitinase PR4 21 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01729 Pumo-Chr11 48898371 48901766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01729 23 234 Glycoside Hydrolase AT3G54420 73.585 1.81e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01729 K01183 - gmx:100527091 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01729 11 48898371 48901766 Pumo11g01729 11 48898371 48901766 ECH
Pumo4g04113 4 81791164 81792283 Pumo11g01729 11 48898371 48901766 PCT