Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04109 ATGAAGAACGACCACAACAACGCCGAACACAACAAAGACACTACCGTAGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTGAGCCAGAGGGTTGAATCTCCAGATTACTCAAGCTTATCCTCTCCAACTTATATAAGGAGCTCCTCATACAGTGAAACTGGCACAAGTGACCACACACCTGAGACAGTAGAGGAGGAAGTTCACTGTACAAGTAAACCATTTGGTATTCCCAATGAGAATAAGTTAAAAGTATCAGCATCCAATGTAGAGAGCTCATCTGAAGAAGTCCGGAAATCTTCCATGGGTGCAAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGAGAAATTGCGTGAATTGTCTTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCTTGATACAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGCCCAAGAACTGTACCTGAAGTGTCATTCTTTCAACAACAGCAAGTTCAGAAATCATTGGAGCGTATTCTTTACACATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATACTTGGAAGGGGGCATAGATAATTGGTCAATGTCTGATTTATCTTCAGATGAAATCTCTAATGTAGAGGCCGACTGCTATTGGTGCTTGTCAAAGTTGCTTGACGGTATGCAGGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTCGTGTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGATCCTGTTTCAAGCCATATGGAGCAGCAAGGATTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTGATCCGTGAGATACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGTGGTCAGACAAGCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAGAACTGGACTCACCAGGAGCTTGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGCATGTTCAACAACTGTCCGAGTCATTTAGCTAACTGA 1353 0.4235 MKNDHNNAEHNKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVESPDYSSLSSPTYIRSSSYSETGTSDHTPETVEEEVHCTSKPFGIPNENKLKVSASNVESSSEEVRKSSMGARATDSARVMKFTKVLSETMVKLEKLRELSWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLDCVSQYYDILDTERSDDEINMLRQIAVDCPRTVPEVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMSDLSSDEISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMEQQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFLLTWSDKLQKLDFQELVMFLQHLPTKNWTHQELEMVLSRAFMWHSMFNNCPSHLAN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04109 450 MobiDBLite consensus disorder prediction 49 75 - -
Pumo4g04109 450 FunFam TBC1 domain family member 127 179 - -
Pumo4g04109 450 Pfam Rab-GTPase-TBC domain 157 402 IPR000195 -
Pumo4g04109 450 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 114 423 - -
Pumo4g04109 450 FunFam TBC domain containing protein 183 314 - -
Pumo4g04109 450 Gene3D - 315 450 - -
Pumo4g04109 450 SMART tbc_4 150 406 IPR000195 -
Pumo4g04109 450 ProSiteProfiles TBC/rab GAP domain profile. 153 380 IPR000195 -
Pumo4g04109 450 Gene3D - 130 181 - -
Pumo4g04109 450 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 130 340 IPR035969 -
Pumo4g04109 450 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 187 314 - -
Pumo4g04109 450 FunFam TBC domain containing protein 315 450 - -
Pumo4g04109 450 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 316 438 IPR035969 -
Pumo4g04109 450 MobiDBLite consensus disorder prediction 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04109 Pumo-Chr4 81779325 81784629 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04109 K20360 - gmx:100785695 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04109 4 81779325 81784629 Pumo4g04109 4 81779325 81784629 ECH
Pumo4g04109 4 81779325 81784629 Pumo11g01724 11 48870263 48875778 PCT