Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01724 ATGAACAAGCGCCAAGAAGATGTGCGCAACATAGCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAACGTTCAAGGGTTACTCAAAGGTCGTAGCATGCCTGGTAAAATATTATTGAGCCGTAAGGTAGACCCTCCGGATAACTCAAACTCGAAGATATCCTCACCAAATTACAAACGGAGCTTTTCTCACAATGATGCTGGCACAAGTGATCATACCTCTGGGGCAGTAGAGGAGGAATTTCAGAGTACAAGCAAACCAATTAGTATTGCCAATGCCACTAAGCTAAAAGTGTCGACCTCCCTTGGAGGGAGCCCGCCCGAAGAATTCCGCAAGTCTACCATGGGTGCTAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCCGGGACGGTGGTTATATTAGACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTGAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGACGAGGTTAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTGGTTGTTTTCTTATCAGAATATTTTGAAGGGGGTATCGATAATTGGTCGATGTCTGATTTATCTTCAGATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCGCGGCACATCGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGATACCATTCCATCTCATCACTCGCCTCTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAGCTCCAGAAACTTGATTTCCAAGAATTGGTAATGTTCCTTCAAAACCTTCCAACAGAGAACTGGACTCACCAGGAGCTTGAGATGGTGCTTTCCCGGGCATTTATGTGGCACACCATGTTCAACAACTCTCCTAGCCATTTAGCTAGCTGA 1347 0.4402 MNKRQEDVRNIATTLDSRFNQTLRNVQGLLKGRSMPGKILLSRKVDPPDNSNSKISSPNYKRSFSHNDAGTSDHTSGAVEEEFQSTSKPISIANATKLKVSTSLGGSPPEEFRKSTMGARATDSARVMKFTKVLSGTVVILDKLRELAWSGVPDNMRPEVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYFEGGIDNWSMSDLSSDIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHIEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQNLPTENWTHQELEMVLSRAFMWHTMFNNSPSHLAS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01724 448 Pfam Rab-GTPase-TBC domain 154 399 IPR000195 -
Pumo11g01724 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 129 338 IPR035969 -
Pumo11g01724 448 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 97 421 - -
Pumo11g01724 448 Gene3D - 128 179 - -
Pumo11g01724 448 SMART tbc_4 148 404 IPR000195 -
Pumo11g01724 448 MobiDBLite consensus disorder prediction 38 86 - -
Pumo11g01724 448 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 188 312 - -
Pumo11g01724 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 436 IPR035969 -
Pumo11g01724 448 MobiDBLite consensus disorder prediction 46 86 - -
Pumo11g01724 448 FunFam TBC1 domain family member 125 177 - -
Pumo11g01724 448 FunFam TBC1 domain family, member 22B 182 312 - -
Pumo11g01724 448 Gene3D - 313 448 - -
Pumo11g01724 448 FunFam TBC domain containing protein 313 448 - -
Pumo11g01724 448 ProSiteProfiles TBC/rab GAP domain profile. 151 378 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01724 Pumo-Chr11 48870263 48875778 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01724 K20360 - gmx:100819281 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04109 4 81779325 81784629 Pumo11g01724 11 48870263 48875778 PCT