Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04082 ATGCCAACTATTTTGCTTAGGATTTTCCTTCTTTACAACCTCGTACACCCATTCCTCCTCTGTCTGGTCCCCAAGAAGGTGCGAGCCTTCCTCCCCCCTTCTTGGTTCCAAACCACGACTGCACCATCTTCTTCTCCTTCTAGCGCCCTCAAGAGAATTTCCATAACAATGGACCCCCACGAGCTCAAGCGCGTGTTCCAGATGTTCGACCGCAACGGCGACGGCCGAATCACCAAGAAGGAGCTCAACGACTCCCTCGAGAATCTCGGCATCTTCATCCCCGACAAGGAGCTCACCCAGATGATCCACAGGATAGACGTCAACGGCGACGGCTGCGTCGACATTGACGAGTTCGGGGAGCTCTACCAGACCATCATGGACGAGCGCGACGAGGAGGAGGACATGAGGGAGGCCTTCAACGTCTTTGATCAGAACGGTGATGGCTTCATCACCGTCGAAGAGTTGAGGACCGTTCTCTCCTCCCTCGGCTTGAAGCAGGGAAGAACCGTCGAAGATTGCAAGAAGATGATCTCCAAGGTCGACGTTGATGGCGATGGCATGGTCGATTACAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTCACTGCTCTCACTTAA 621 0.5362 MPTILLRIFLLYNLVHPFLLCLVPKKVRAFLPPSWFQTTTAPSSSPSSALKRISITMDPHELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELTQMIHRIDVNGDGCVDIDEFGELYQTIMDERDEEEDMREAFNVFDQNGDGFITVEELRTVLSSLGLKQGRTVEDCKKMISKVDVDGDGMVDYKEFKQMMKGGGFTALT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04082 206 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Pumo4g04082 206 Pfam EF-hand domain pair 61 123 IPR002048 GO:0005509
Pumo4g04082 206 Pfam EF-hand domain pair 132 198 IPR002048 GO:0005509
Pumo4g04082 206 CDD EFh 138 198 IPR002048 GO:0005509
Pumo4g04082 206 SUPERFAMILY EF-hand 61 199 IPR011992 -
Pumo4g04082 206 ProSitePatterns EF-hand calcium-binding domain. 143 155 IPR018247 -
Pumo4g04082 206 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Pumo4g04082 206 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Pumo4g04082 206 SMART efh_1 97 125 IPR002048 GO:0005509
Pumo4g04082 206 SMART efh_1 61 89 IPR002048 GO:0005509
Pumo4g04082 206 SMART efh_1 134 162 IPR002048 GO:0005509
Pumo4g04082 206 SMART efh_1 172 200 IPR002048 GO:0005509
Pumo4g04082 206 ProSiteProfiles EF-hand calcium-binding domain profile. 168 203 IPR002048 GO:0005509
Pumo4g04082 206 Gene3D - 59 123 - -
Pumo4g04082 206 Gene3D - 124 200 - -
Pumo4g04082 206 ProSiteProfiles EF-hand calcium-binding domain profile. 130 165 IPR002048 GO:0005509
Pumo4g04082 206 FunFam Calmodulin-like protein 5 41 130 - -
Pumo4g04082 206 ProSitePatterns EF-hand calcium-binding domain. 181 193 IPR018247 -
Pumo4g04082 206 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 132 198 - -
Pumo4g04082 206 FunFam calmodulin-like protein 3 131 201 - -
Pumo4g04082 206 CDD EFh 61 118 IPR002048 GO:0005509
Pumo4g04082 206 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04082 Pumo-Chr4 81523635 81525081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04082 5 204 EF-hand Containing Proteins AT2G43290 65.258 8.37e-96 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04082 K13448 - gmx:100527487 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04082 4 81523635 81525081 Pumo4g04082 4 81523635 81525081 ECH
Pumo4g04082 4 81523635 81525081 Pumo11g01695 11 48618562 48619596 PCT