Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01695 ATGGACCCTGTGGAGCTGAAGCGCGTTTTCCAAATGTTCGACCGCAACGGCGACGGGAGAATCACGTTGAAGGAGCTGAGCGACTCCTTGGAGAATTTGGGAATCTTCATCCCGGACAACGACCTGGAACAGATGATCGAGAGGATCGACATCAACGGCGACGGTTGCGTGGACATGGACGAGTTTGGGGATTTGTATGAGTCCATCATGGAGGAGCGCGACGAGGAGGAGGACATGAGGGAGGCCTTTAACGTGTTCGACCAGAACCGCGACGGCTTCATCACCGTCGAGGAACTGCGGACGGTGCTGGCCTCCCTCGGACTCAAACAGGGGAGGACCCTCGACGAGTGCAAGAAGATGATCATGAAAGTCGACCTTGATGGAGATGGCATGGTTAATTACAAGGAGTTCAGGCAAATGATGAAGGGAGGAGGCTTCACTGCTCTTACTTAG 453 0.543 MDPVELKRVFQMFDRNGDGRITLKELSDSLENLGIFIPDNDLEQMIERIDINGDGCVDMDEFGDLYESIMEERDEEEDMREAFNVFDQNRDGFITVEELRTVLASLGLKQGRTLDECKKMIMKVDLDGDGMVNYKEFRQMMKGGGFTALT 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01695 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Pumo11g01695 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Pumo11g01695 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Pumo11g01695 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Pumo11g01695 150 SMART efh_1 78 106 IPR002048 GO:0005509
Pumo11g01695 150 SMART efh_1 41 69 IPR002048 GO:0005509
Pumo11g01695 150 SMART efh_1 5 33 IPR002048 GO:0005509
Pumo11g01695 150 SMART efh_1 116 144 IPR002048 GO:0005509
Pumo11g01695 150 FunFam Calmodulin-like protein 3 1 70 - -
Pumo11g01695 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Pumo11g01695 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Pumo11g01695 150 Gene3D - 3 68 - -
Pumo11g01695 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Pumo11g01695 150 Gene3D - 69 144 - -
Pumo11g01695 150 SUPERFAMILY EF-hand 5 141 IPR011992 -
Pumo11g01695 150 PRINTS Parvalbumin signature 124 137 - -
Pumo11g01695 150 PRINTS Parvalbumin signature 65 83 - -
Pumo11g01695 150 PRINTS Parvalbumin signature 87 103 - -
Pumo11g01695 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 142 - -
Pumo11g01695 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Pumo11g01695 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Pumo11g01695 150 FunFam calmodulin-like protein 3 72 145 - -
Pumo11g01695 150 CDD EFh 82 142 IPR002048 GO:0005509
Pumo11g01695 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Pumo11g01695 150 CDD EFh 5 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01695 Pumo-Chr11 48618562 48619596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01695 1 148 EF-hand Containing Proteins AT2G43290 73.856 1.92e-78 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01695 K13448 - gmx:100796922 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04082 4 81523635 81525081 Pumo11g01695 11 48618562 48619596 PCT