Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04077 ATGCATTGCATTGCATTGCTGATCTCCACTCCATATTCAATTTTGGAGTCTGAAATGTTGGTGGTTTCTTTGGGGCGAATCCATGTCTTTTCCTCCTTCCATCTCCATAAAGTTCATACTTTCACTCCTGCTTCTGCTTCAGTGTCCCAACTTCGAGTCTCTCTGACTCTGAGTAACAAGAGAGCCAAAAAAAGCTTGCAACTTCAACACGTGCCCGAACCTGAAGTTGAAGACCCTAAGGAGATCCGAGGATTTGCACACACAGGACCAAATGAATTGGCTCAAAGCAGTGAGGGTGAGGCCCCTGCAAATTGGAAAAAGGTTCTTCAAGGGATTCGCCAAATGAGAAGTTCTGCAGATGAACATGAACCGGTTTCACGTGAGAAAGCTGGTGATACTGTACCTCCTAAGGAAAGAAGATTTGCTGTCCTGGCATCTTCCCTTTTATCAAGCCAAACTAAGGAGCATGTTACTCGTGGAGCAACTCAGCGACTTCATGAAAATGGTCTGCTTACCGCTGATGCAATGAGCAAAGCTGATGAAGAAACCATCAAAAAGTTGATTTACCCTGTTGGATTTTATACAAGAAAAGCCAGTAACTTGAAGAAAATTGCCAATATTTGTCTCATGAAGTATGATGGAGACATACCTAGCTCAATTGAGGAACTACTCTTGCTGCCAGGAGTAGGTCCTAAGATTGCTCATCTGGTTATGATTGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACCCATGTCCACCGCATTTGCAATCGTCTTGGATGGGTTTCGAGACCAGGCTCAAAACAGAAAACTTTGACACCTGAAGAAACAAGACAAGCGCTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGGTTTGGACGAGCAATTTGTACTCCTCTAAGGCCTCACTGTGGAGAGTGTAGTGTAAGTAGGTTCTGTCCATCAGCGTACAAGGAAACTTCAAGCTTGTCATCCAAGTCCAAAAAGTTTACATTGAACAAGAAGCTTTAA 1041 0.4361 MHCIALLISTPYSILESEMLVVSLGRIHVFSSFHLHKVHTFTPASASVSQLRVSLTLSNKRAKKSLQLQHVPEPEVEDPKEIRGFAHTGPNELAQSSEGEAPANWKKVLQGIRQMRSSADEHEPVSREKAGDTVPPKERRFAVLASSLLSSQTKEHVTRGATQRLHENGLLTADAMSKADEETIKKLIYPVGFYTRKASNLKKIANICLMKYDGDIPSSIEELLLLPGVGPKIAHLVMIVGWNNVQGICVDTHVHRICNRLGWVSRPGSKQKTLTPEETRQALQRWLPKEEWVPINPLLVGFGRAICTPLRPHCGECSVSRFCPSAYKETSSLSSKSKKFTLNKKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04077 346 SUPERFAMILY DNA-glycosylase 134 330 IPR011257 GO:0003824|GO:0006281
Pumo4g04077 346 SMART ccc3 306 326 IPR003651 GO:0051539
Pumo4g04077 346 FunFam Endonuclease III homolog 239 329 - -
Pumo4g04077 346 Gene3D Hypothetical protein; domain 2 127 240 - -
Pumo4g04077 346 Pfam Helix-hairpin-helix motif 211 238 IPR000445 GO:0003677
Pumo4g04077 346 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 59 339 - -
Pumo4g04077 346 MobiDBLite consensus disorder prediction 116 135 - -
Pumo4g04077 346 Pfam HhH-GPD superfamily base excision DNA repair protein 146 287 IPR003265 GO:0006284
Pumo4g04077 346 ProSitePatterns Endonuclease III family signature. 214 243 IPR004036 -
Pumo4g04077 346 FunFam Endonuclease III-like protein 1 136 240 - -
Pumo4g04077 346 SMART endo3end 149 305 IPR003265 GO:0006284
Pumo4g04077 346 CDD ENDO3c 141 303 IPR003265 GO:0006284
Pumo4g04077 346 Hamap Endonuclease III-like protein 1 [NTHL1]. 101 329 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Pumo4g04077 346 Gene3D - 241 329 IPR023170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04077 Pumo-Chr4 81491990 81494427 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04077 K10773 - gmx:100805799 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04077 4 81491990 81494427 Pumo4g04077 4 81491990 81494427 ECH
Pumo4g04077 4 81491990 81494427 Pumo11g01686 11 48517376 48520979 PCT