Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04047 ATGGGTGGCGTTAGGTCTATGACGGTGGTGGTAGTAGTGTTATTTATTATGGCCCTGAGCTCCGGGGTGCGGGCGTGTCCGCCGTCAGACAGGGCGGCGCTGCTGGCATTCAAGGCGGCGCTCCACGAGCCCTACCTCGGAATCTTCAACTCGTGGACCGGCGCGGACTGCTGCCACAAGTGGTACGGCGTGAGCTGCGACCAGGAGACCCGCCGCGTCGCCGACATCAACCTCCGCGGCGAATCGGAGGAGCCGATCTTCGAGCGAGCCCACCGCACCGGCTACATGACCGGCTACATCTCTCCGGCGATCTGCAAGCTTGCGCGCCTCTCCAGCATCACCATCGCCGACTGGAAGGGAATCTCCGGCGAGATCCCGCGCTGCATCACCACCCTCCCCTTCCTCCGCATCGTCGACCTCATCGGAAACCGCCTCTCCGGCTCCATCCCCGCCGACATCGGCCGCCTCCACCGCCTCACGGTGCTCAACGTCGCTGACAACCTCATCTCCGGCACCATCCCGGCCTCGCTCGTGAACCTCGCGAGCCTCATGCACTTGGACCTCCGCAACAACCTCCTCTCCGGGCCCATTCCGAAGAACTTCGGTTCTCTTGGAATGCTGAGCCGGGCCTTGCTCAGTGGAAACCGACTTAGTGGGCCCATCCCAGACTCGGTTTCTCAGATTTACCGTCTGGCGGATCTGGATCTGTCTCGGAACCAGATTTCTGGGCCCATTCCGGAGTCGCTGGGTAAAATGGCGGTTTTATCAACACTAAATTTGGACATGAATAAACTCTCTGGGCCCATTCCGGTGAGCCTGTTTAGTTCGGGGATCGGTGACTTGAACCTGAGCCGAAACGCGTTGGAGGGGAATATACCCGACGCGTTTGGCGTGAGGTCTTATTTCACGGTTCTGGATTTGTCCTATAATAACCTCAAAGGGGCCATACCCAAGTCCATATCCTCTGCTTCGTATATTGGACACTTGGATTTGAGTCACAACCATCTCTGTGGCAAGATTCCCGTTGGCTCTCCCTTCGATCATCTCGAAGCGTCGTCGTTTGTGTACAACGATTGTCTCTGCGGGAAGCCACTCAAACCTTGCTAG 1107 0.5845 MGGVRSMTVVVVVLFIMALSSGVRACPPSDRAALLAFKAALHEPYLGIFNSWTGADCCHKWYGVSCDQETRRVADINLRGESEEPIFERAHRTGYMTGYISPAICKLARLSSITIADWKGISGEIPRCITTLPFLRIVDLIGNRLSGSIPADIGRLHRLTVLNVADNLISGTIPASLVNLASLMHLDLRNNLLSGPIPKNFGSLGMLSRALLSGNRLSGPIPDSVSQIYRLADLDLSRNQISGPIPESLGKMAVLSTLNLDMNKLSGPIPVSLFSSGIGDLNLSRNALEGNIPDAFGVRSYFTVLDLSYNNLKGAIPKSISSASYIGHLDLSHNHLCGKIPVGSPFDHLEASSFVYNDCLCGKPLKPC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04047 368 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Pumo4g04047 368 Gene3D Ribonuclease Inhibitor 198 276 IPR032675 -
Pumo4g04047 368 SUPERFAMILY L domain-like 25 367 - -
Pumo4g04047 368 FunFam Leucine-rich repeat family protein 24 92 - -
Pumo4g04047 368 Gene3D Ribonuclease Inhibitor 29 197 IPR032675 -
Pumo4g04047 368 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 7 275 - -
Pumo4g04047 368 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 101 197 - -
Pumo4g04047 368 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Pumo4g04047 368 Pfam Leucine rich repeat 281 336 IPR001611 GO:0005515
Pumo4g04047 368 FunFam Leucine-rich repeat receptor protein kinase EMS1 198 276 - -
Pumo4g04047 368 Gene3D Ribonuclease Inhibitor 281 368 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04047 Pumo-Chr4 81168733 81170810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04047 91 368 Receptor kinase-like Gene Family AT5G46330 39.085 7.22e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04047 - - gmx:100804739 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04047 4 81168733 81170810 Pumo4g04047 4 81168733 81170810 ECH
Pumo4g04047 4 81168733 81170810 Pumo11g01667 11 48050663 48051921 PCT