Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03978 ATGGGTCAGAGCCTCAGTTGCAGAGGCAACCATGACCACGGCCTCTTCACCGCCGTGCAGCACGGTGACCTTCAATTTGTCACAACTCTCTTGGACTCCGACCCCTCTCTCTTACACCAAACCACTCTCTACGATCGCCACTCTCCTCTACATATTGCCGCAGCCAATGGCCAGATCGAGATTCTCTCTAGGCTTTTAGATGGATCTCTTAACCCAGATGTTTTAAATCGCCACAAGCAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCCTGTGTCGAGAAGCTTCTTCAAGCCGGAGCTAATGTTTTGATGTTTGATACTATTTACGGGAGAACCTGCTTACACTATGCCGCATACTACGGCCATTCTTCTTGCCTCAAGGCTATTCTTTCCGCTGCTCAGTCTAGTCCAGTGGCTGCTTCCTGGGGGTTTGTTCGGTTTGTGAATATTAGAGATGGAAAGGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGACGGTCTGAATGTGTACATATTCTATTGGACAGTGGAGCTCTTGTTTGTGCTTCAACTGGTGGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCTAGAGGGGGATCTCTGGATTGCATTCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTCAACGCGATGCATCTGGGCGGATACCATATATGGTTGCTCTGAAACACAAACATGGAGCCTGTGCATCATTGCTAAATCCTACATCTGCAGAACCTCTTGTCTGGCCATCTCCATTGAAGTTCATCAGTGAGCTTAATCCTGAAGCCAAAGCTTTATTAGAACAGGCCTTGATGGATGCAAACAGAGAAAGAGAGAAAAACATATTGAAAGGGAGTGCTGACTCTCTTCCATCTCCATCACATTCTGATTGGGTAGCTGATAATATGTCTGAGGTTAGTGAGTCCGAATTATGTTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTTCAAAACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACTGCCTGTCTTACTCCACCAGTTTGTCCATTTTGTCGAAGCACCATAACAAGACTCATGGTTGTGAAGACAGAATGCCATGATGAAACTGATCAAGATAGTGTTGATATCAGTTGTTCCAAGCTAAGCAAGTCATCAAGGAAACTCAGAAACTTGAATGACACAGGTAGCAGCAGCTTCAAGGGAATATCTAGTGTTAGTTCATTCGGGAAGTTGGGTAGCCGCAGCTCTGGAAGGATTGCTGCTGAGTGGGTCGATAAACAGTGA 1335 0.4757 MGQSLSCRGNHDHGLFTAVQHGDLQFVTTLLDSDPSLLHQTTLYDRHSPLHIAAANGQIEILSRLLDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLQAGANVLMFDTIYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFVRFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSADSLPSPSHSDWVADNMSEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLMVVKTECHDETDQDSVDISCSKLSKSSRKLRNLNDTGSSSFKGISSVSSFGKLGSRSSGRIAAEWVDKQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03978 444 SUPERFAMILY Ankyrin repeat 12 250 IPR036770 -
Pumo4g03978 444 MobiDBLite consensus disorder prediction 409 444 - -
Pumo4g03978 444 Gene3D - 9 146 IPR036770 -
Pumo4g03978 444 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Pumo4g03978 444 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Pumo4g03978 444 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Pumo4g03978 444 Gene3D - 198 251 IPR036770 -
Pumo4g03978 444 Gene3D - 148 197 IPR036770 -
Pumo4g03978 444 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Pumo4g03978 444 SUPERFAMILY RING/U-box 314 375 - -
Pumo4g03978 444 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Pumo4g03978 444 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Pumo4g03978 444 MobiDBLite consensus disorder prediction 409 430 - -
Pumo4g03978 444 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Pumo4g03978 444 Pfam Ankyrin repeats (many copies) 195 234 IPR002110 GO:0005515
Pumo4g03978 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 378 IPR013083 -
Pumo4g03978 444 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 15 139 - -
Pumo4g03978 444 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Pumo4g03978 444 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Pumo4g03978 444 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Pumo4g03978 444 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Pumo4g03978 444 SMART ANK_2a 112 142 IPR002110 GO:0005515
Pumo4g03978 444 SMART ANK_2a 194 223 IPR002110 GO:0005515
Pumo4g03978 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Pumo4g03978 444 SMART ANK_2a 10 39 IPR002110 GO:0005515
Pumo4g03978 444 SMART ANK_2a 227 256 IPR002110 GO:0005515
Pumo4g03978 444 SMART ANK_2a 157 186 IPR002110 GO:0005515
Pumo4g03978 444 SMART ANK_2a 78 107 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03978 Pumo-Chr4 80419970 80423505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03978 12 211 Miscellaneous Gene Families AT5G02620 30.097 4.70e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03978 - - gmx:100786708 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03978 4 80419970 80423505 Pumo4g03978 4 80419970 80423505 ECH
Pumo4g03978 4 80419970 80423505 Pumo11g01587 11 47173887 47176772 PCT