Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01587 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTTGCGGCTTTGTTAAACACACACCCTTCTCTTATGAACCACACCACTGTCTATGATCACCACTCTCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTATCTTGGCTTTTGGATGGATCTGTGAATCCAGATGTGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCTTGTGTGGAAAAGCTCCTTGAAGCCGGTGCTAATGTATTAATGTTTGATGCTTGTTACGGAAGAACCTGCTTGCACTATGCAGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTCTCTGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGTAGGGGTGCAACACCATTGCATTTGGCAGCTCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACTGGAAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCAAAAGGGGGATCTTTGGATTGCATCCGAGAACTGTTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCCTCTGGGCGGATACCATATGTGGTTGCTCTGAAACATAGACATGGCGCATGTGCAGCATTGCTGAATCTTTCATCTGCTGAGCCTCTTGTATGGCCATCATCTTTGAAGATCATCAGTGAGCTTAATCCAGACGCCAAAGAATTACTAGAGCGGGCACTGATGGATGCAAACAAGGAAAGGGAGAGAAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCATCACATTCTGATGACAATATCTCTGAGGTTAGTGAGACGGAATTATGCTGCATCTGCTTTGAGCAAGTGTGTACAATTGAGGTCCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTCTACTTCTCGTATTATCCCACCAGTTTGTCCATTCTGCCGAAGCAGCATAGCAAGATTGGTAGTTGTGAAAAAAGAAAGCCATGATGACATTGATCAAGATGGTGTTGATATAACTTGTTCCAAGCCAAGCAAGTCAAAGAAATCGCGAAACTTGAACGAGGGTGGTAGCAGCAACATTAAGGGACTATCAAATGTGAACTCATTTGGAAAAATGGGTGGCCGCAGCTCTGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1335 0.4629 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLNTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHGACAALLNLSSAEPLVWPSSLKIISELNPDAKELLERALMDANKERERNILKGSDYSLPSPSHSDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTSRIIPPVCPFCRSSIARLVVVKKESHDDIDQDGVDITCSKPSKSKKSRNLNEGGSSNIKGLSNVNSFGKMGGRSSGKIAAENEWEDDKQQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01587 444 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Pumo11g01587 444 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Pumo11g01587 444 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Pumo11g01587 444 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Pumo11g01587 444 Gene3D - 143 197 IPR036770 -
Pumo11g01587 444 Gene3D - 8 82 IPR036770 -
Pumo11g01587 444 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Pumo11g01587 444 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Pumo11g01587 444 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Pumo11g01587 444 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Pumo11g01587 444 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Pumo11g01587 444 CDD RING-HC_XBAT31-like 309 373 - -
Pumo11g01587 444 ProSiteProfiles Zinc finger RING-type profile. 317 366 IPR001841 -
Pumo11g01587 444 SUPERFAMILY RING/U-box 316 371 - -
Pumo11g01587 444 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Pumo11g01587 444 SMART ANK_2a 112 142 IPR002110 GO:0005515
Pumo11g01587 444 SMART ANK_2a 78 107 IPR002110 GO:0005515
Pumo11g01587 444 SMART ANK_2a 157 186 IPR002110 GO:0005515
Pumo11g01587 444 SMART ANK_2a 10 39 IPR002110 GO:0005515
Pumo11g01587 444 SMART ANK_2a 194 223 IPR002110 GO:0005515
Pumo11g01587 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Pumo11g01587 444 MobiDBLite consensus disorder prediction 402 424 - -
Pumo11g01587 444 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Pumo11g01587 444 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
Pumo11g01587 444 Gene3D - 198 251 IPR036770 -
Pumo11g01587 444 Gene3D - 83 142 IPR036770 -
Pumo11g01587 444 PANTHER ANKYRIN REPEAT CONTAINING 151 270 - -
Pumo11g01587 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 375 IPR013083 -
Pumo11g01587 444 MobiDBLite consensus disorder prediction 395 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01587 Pumo-Chr11 47173887 47176772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01587 12 285 Miscellaneous Gene Families AT5G60070 29.433 3.40e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01587 - - gmx:100800611 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03978 4 80419970 80423505 Pumo11g01587 11 47173887 47176772 PCT