Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03944 ATGGAGATTGATCTTTCTCCCCAGTTGGCCAAGAAAGTTTACGAAGGCAATGGTGGGTCCTACTATGCCTGGTCCCCCTCTGAGCTTCCCATGCTCCGCGAAGGCAACATTGGTGCCGCCAAGCTCGCTCTCAACAAAAACGGCTTCGCCCTTCCTCGTTACTCCGACTCTTCTAAAGTCGCTTATGTTCTCCAAGGAAGTGGAGTGGCTGGAATAGTGCTGCCTGAATCAGAAGAGAAGGTTGTTGCAATCAAGAAGGGTGATGCCTTGGCACTCCCCTTTGGTGTTGTGACCTGGTGGTACAACAAGGAAGATACTGAGTTGGTTGTTCTGTTCCTTGGGGAAACTTCCAAGGCTCACAAGGCTGGTGAATTCACTGACTTTTTTCTGACTGGTTCCAATGGAATCTTCACTGGTTTTTCTACTGAGTTTGTGGGCAGGGCTTGGGACTTGGAAGAGAGTGATGTCAAGACCCTTGTTGGAAAACAATCAGGCAAAGGGATTGTGCAGCTTGAAGGAAACATCAGCCTTCCTGAGCCGAAACCGGTGCACCGGAACGGCATGGCCTTGAACTGTGAAGAGGCTCCATTGGATGTCGACATCAAGGGTGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCCTTGGTTGGTGAGGTTGGGCTAGGGGCTGACCTTGTGAGGCTGAATGGAAGAGCCATGTGTTCTCCCGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTATATTGTCAGGGGTAGTGGCCGGGTTCAGGTTGTTGGTGTTGATGGCCGTAGGGTTTTGGAGACAACTGTGAAAGCTGGTAACTTGTTCATTGTGCCAAGGTTTTTTGTGGTCTCAAAGATTGCTGATCCTGATGGACTGGAGTGGTTCTCTATCATCTCCACCCCCAATCCTATATTTACCCACTTGGCTGGAAGTTCTTCCGTGTGGAAGGCTTTATCACCTTCGGTTCTGCAAGCTGCTTTCAATGTAGATCCAGAAGTTGAGCAACTGTTCCGTTCAAAGAGGACTGCCGATGCCATTTTCTTCCCTCCACCAAACTAG 1071 0.4949 MEIDLSPQLAKKVYEGNGGSYYAWSPSELPMLREGNIGAAKLALNKNGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEDTELVVLFLGETSKAHKAGEFTDFFLTGSNGIFTGFSTEFVGRAWDLEESDVKTLVGKQSGKGIVQLEGNISLPEPKPVHRNGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGEVGLGADLVRLNGRAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADPDGLEWFSIISTPNPIFTHLAGSSSVWKALSPSVLQAAFNVDPEVEQLFRSKRTADAIFFPPPN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03944 356 SMART Cupin_1_3 195 339 IPR006045 -
Pumo4g03944 356 SMART Cupin_1_3 3 157 IPR006045 -
Pumo4g03944 356 SUPERFAMILY RmlC-like cupins 12 345 IPR011051 -
Pumo4g03944 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Pumo4g03944 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Pumo4g03944 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Pumo4g03944 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Pumo4g03944 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Pumo4g03944 356 FunFam Glycinin G1 192 356 - -
Pumo4g03944 356 CDD cupin_11S_legumin_N 4 173 - -
Pumo4g03944 356 CDD cupin_11S_legumin_C 198 353 - -
Pumo4g03944 356 PANTHER OS03G0336100 PROTEIN-RELATED 8 355 - -
Pumo4g03944 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Pumo4g03944 356 Pfam Cupin 10 156 IPR006045 -
Pumo4g03944 356 Pfam Cupin 199 338 IPR006045 -
Pumo4g03944 356 Gene3D Jelly Rolls 3 194 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03944 Pumo-Chr4 80065106 80067575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03944 35 336 Miscellaneous Gene Families AT2G18540 22.159 3.41e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03944 - - gmx:100795038 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03944 4 80065106 80067575 Pumo4g03944 4 80065106 80067575 ECH
Pumo4g03944 4 80065106 80067575 Pumo11g01554 11 46795914 46798392 PCT