Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01554 ATGGAAATTGATCTTTCTCCCCAGTTGGCGAAGAAGGTGTACGAAGGCAATGGTGGGTCTTACCATGCATGGTCCCCTTCGGAGCTTCCCATGTTGCGTGAAGGGAACATTGGTGCTGCCAAACTAGCTCTTCAAAAAAATGGCTTTGCCCTTCCTCGTTACGCTGACTCTTCCAAGGTTGCATACGTTCTCCAAGGAAGTGGAGTTGCTGGAATTGTGCTCCCTGAATCAGAAGAGAAGGTTGTTGCAATTAAGAAGGGTGATGCTTTGGCACTCCCTTTTGGTGTGATAACATGGTGGTACAACAAGGAGGACACTGAGTTGGTTGTTCTGTTCTTGGGTGACACTTCAAAAGCCCACAAGACTGGTGAATTCACTGATTTTTTCCTAACTGGTTCCAATGGAATCTTCACTGGATTTTCAGCTGAGTTTGTGGGAAGAGCCTGGGACTTGGAAGAGAAGGATGTGAAGACCCTTGTTGGGAAACAATCAGGTAAGGGTATTGTGATGCTTGAAGGGAACATCAACCTTCCCGAGCCCAAAGAGGAACATAGGAAGGGCATGGCATTGAACTGTTTAGAGGCTCCATTGGATGTTGACATTAAGAACGGTGGAAGGGTTGTGGTCTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTAGGAGCAGACCTTGTGAGGCTGGATGGAAAAGCCATGTGTTCTCCTGGATTCTCTTGTGATTCTGCATTGCAGGTTACTTATATTGTCAGAGGGAGTGGTCGTGCTCAGATTGTTGGTGCTGATGGTCGCAGGGTTTTGGAGACAACTGTGAAGGCTGGTAACTTGTTCATTGTGCCAAGGTTTTTTGTTGTCTCAAAGATTGCTGACTCTGATGGATTGGAGTGGTTCTCTATCATCACTACCCCCAATCCTGTATTTACTCACCTGGCTGGAAGTATTTCGGCATGGAAGGCTCTTTCACCCACGGTTCTGCAGGCTGCTTTCAATGTAGACGAAGGACTTGAGCAACTCTTCCGTTCAAAGAGGAATGCTGATGCCATTTTCTTCCCTCCTCCAAATTAA 1071 0.4697 MEIDLSPQLAKKVYEGNGGSYHAWSPSELPMLREGNIGAAKLALQKNGFALPRYADSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVITWWYNKEDTELVVLFLGDTSKAHKTGEFTDFFLTGSNGIFTGFSAEFVGRAWDLEEKDVKTLVGKQSGKGIVMLEGNINLPEPKEEHRKGMALNCLEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGADGRRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFSIITTPNPVFTHLAGSISAWKALSPTVLQAAFNVDEGLEQLFRSKRNADAIFFPPPN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01554 356 Gene3D Jelly Rolls 196 356 IPR014710 -
Pumo11g01554 356 CDD cupin_11S_legumin_N 4 173 - -
Pumo11g01554 356 CDD cupin_11S_legumin_C 198 353 - -
Pumo11g01554 356 SUPERFAMILY RmlC-like cupins 12 346 IPR011051 -
Pumo11g01554 356 SMART Cupin_1_3 195 339 IPR006045 -
Pumo11g01554 356 SMART Cupin_1_3 3 157 IPR006045 -
Pumo11g01554 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Pumo11g01554 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Pumo11g01554 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Pumo11g01554 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Pumo11g01554 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Pumo11g01554 356 FunFam Glycinin G1 193 356 - -
Pumo11g01554 356 Pfam Cupin 196 335 IPR006045 -
Pumo11g01554 356 Pfam Cupin 10 156 IPR006045 -
Pumo11g01554 356 PANTHER OS03G0336100 PROTEIN-RELATED 8 355 - -
Pumo11g01554 356 Gene3D Jelly Rolls 3 195 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01554 Pumo-Chr11 46795914 46798392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01554 35 347 Miscellaneous Gene Families AT2G18540 21.154 3.26e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01554 - - gmx:100782055 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03944 4 80065106 80067575 Pumo11g01554 11 46795914 46798392 PCT