Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03938 ATGGAGTTCCTCACTTTACTTTATGGTTCTATGGCATTGTACTTGTGTTTTCTGATCTGGAAATTGTTTGATCAGAGAAGGGACCAAGAATGCTACATATTGGACTACCAACTGTACAAGCCAAGCGATGAAAGAAAGCTTGGAACTGAACGATGTGGGAAGATCATAGGAAGGAACAAGCACTTGGGTCTGAATGAGTACAAGTTCCTCCTCAAAGCCATTGTCAACTCTGGCATTGGTGAGGAAACTTATGCCCCAAGAAACGTCATCGAGGGTCGTGAGGCAAATCCAACGTTGGACGATGGTGTCACAGAAATGGAGGAGTTTTTCCATGACAGCATTGGCAAACTCCTTGAAAGGTCAGGAATTTCCCCCTCACAGATCGATGTCCTTGTGGTTAATGTTTCTATGTTCGCTGTTGTTCCTTCCTTAACTTCGAGAATCATTAACCACTACAAAATGAGGGAGGACATAAAGGCTTACAACCTCACTGGCATGGGGTGCAGTGCTAGCCTTATTTCCATGGACGTCATAAGGAACGTTTTCAAGTCACAAAAGAACAAGTGTGCTCTTTTGGTGACTTCTGAGTCTCTCAGTCCAAACTGGTACAATGGCAACGACAGATCAATGATTCTTGCCAACTGTCTGTTCAGGACTGGTGGATGTGTCATTCTCTTGACAAACAAAAGGTCCTTGAAGCACAGGGCCATGTTCAAGTTGAAGTGCTTGGTGAGGACCCATCATGGTGCTAAAGAAGATGCCTATAGTTGCTGCAATCAGAAGGAAGATGAGCAAGGCAGGCTTGGGTTCTACCTTGCCAAAAATCTCCCCAAGGCAGCTACAAGGGCCTTTGTTGAGAATTTAAGGGTGTTGTCACCCAAGGTTTTGCCAACTAGGGAGTTGCTCAGGTTTATGATAGTGTCCCTCATAAAAAAACTGAGCCAAACTAGTACTTCCCTCAAGTCTTCAAGTGGGGGATCTAGCAAATCTCCTTTGAACTTCAAGACTGGGGTGGAACATTTTTGCCTCCACACAGGAGGAAAGGCTGTGATAGATGGGATTGGAATGAGCTTAGATCTGTGTGAGTATGATCTTGAGCCAGCCAGGATGACACTGCACCGTTTTGGTAACACTTCAGCAAGTAGCCTGTGGTATGTGCTGGGGTACATGGAGGCCAAGAAGAGGCTGAAGAAAGGTGACAGAGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTAATGAAGGATCTGGGGGGTCATACAAATGTGTGGAGTGACTGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGAAGTTTGGTTGGATCAACAATGTTGAAGATGCAAGCACCTTCAAACTTCCTGATTTATTTCTCAACAAGTAA 1419 0.451 MEFLTLLYGSMALYLCFLIWKLFDQRRDQECYILDYQLYKPSDERKLGTERCGKIIGRNKHLGLNEYKFLLKAIVNSGIGEETYAPRNVIEGREANPTLDDGVTEMEEFFHDSIGKLLERSGISPSQIDVLVVNVSMFAVVPSLTSRIINHYKMREDIKAYNLTGMGCSASLISMDVIRNVFKSQKNKCALLVTSESLSPNWYNGNDRSMILANCLFRTGGCVILLTNKRSLKHRAMFKLKCLVRTHHGAKEDAYSCCNQKEDEQGRLGFYLAKNLPKAATRAFVENLRVLSPKVLPTRELLRFMIVSLIKKLSQTSTSLKSSSGGSSKSPLNFKTGVEHFCLHTGGKAVIDGIGMSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGDRVLMISFGAGFKCNSCLWEVMKDLGGHTNVWSDCIDDYPPESLANPFMEKFGWINNVEDASTFKLPDLFLNK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03938 472 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
Pumo4g03938 472 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Pumo4g03938 472 SUPERFAMILY Thiolase-like 243 421 IPR016039 GO:0016746
Pumo4g03938 472 SUPERFAMILY Thiolase-like 17 232 IPR016039 GO:0016746
Pumo4g03938 472 CDD CHS_like 12 418 - -
Pumo4g03938 472 PANTHER 3-KETOACYL-COA SYNTHASE 13 440 IPR012392 GO:0006633|GO:0016020|GO:0016747
Pumo4g03938 472 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 338 419 IPR013747 -
Pumo4g03938 472 Gene3D - 61 420 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03938 Pumo-Chr4 79994984 79996894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03938 19 470 Acyl Lipid Metabolism Gene Families AT2G28630 70.806 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03938 K15397 - gmx:100790992 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03938 4 79994984 79996894 Pumo4g03938 4 79994984 79996894 ECH
Pumo4g03938 4 79994984 79996894 Pumo11g01541 11 46500178 46502196 PCT