Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01541 ATGGAGTTCCTCTACCTCCTCTACCTCGTTCCAACGTTGTACGCGTGCTTCCTCATCTGGAAAATGTTCGACGAGAGAAGGGACAGGGAGTGCTACATCCTTAACTACCAATGCTACAAGCCCCCCAACGACCGAATGCTCGGCTCCGATTTCTGCGGCCAGCTCATCAAACGCACCGAAAATCTGGGCCCCAGCGAGTACCGCTTCCTCCTCAAAGCCATCGTCAGCTCCGGCATCGGCGAACAAACGTACGCGCCAAGGAACATCTTCGAGGGCCGCGAGGCGAGTCCCACATTGCGCGACGGCATCGCCGAAATGGAAGAGTTCTTCCACGACAGCATCGGGAAACTCCTCAAAAAATCCAACGTTTCCCCCTCCGAGATCGACGTCCTCGTCGTCAACATCTCCATGCTCGCCACAATCCCCTCCCTCTCTTCGCAAATCATCAACCACTACAAAATGCGCCACGACGTCAAGGTCTACAACCTCACCGGCATGGGCTGCAGCGCCAGCCTCATCTCCATGGACATAGTCAAAAACATTTTCAAGACGCAGAGCAACAAGCTCGCACTGTTGATCACTTCGGAATCTTTGAGTCCGAATTGGTACACGGGAAGCGACAGATCCATGATTCTTGCTAATTGTCTGTTCCGTTCGGGAGGGTGCGCGATTCTCTTGACGAACAAGAGATCCTTGAAGGACAAGGCCATGCTGAAGCTGAAGTGTTTGGTGAGAACGCACCACGGTGCAAGAGAAGAAGCTTATGGTTGTTGTATTCAGCAGGAAGACGATCAAGGAAGACTCGGATTTCACCTTGGGAAGACTCTTCCCAAGGCCGCCACCCGAGCCTTCGTTGATAATCTTCGAGTGATAGCGCCCAAGATATTACCTATCCGTGAGCTGCTCAGGTTCATGTTTGTATCACTTATTAAAAAGATCAACAAGAGTAACACTCCGAAGTCTGTTGCAAGCACTGGAGCGACTAAATCTCCGTTGAACTTCCGAACCGGAGTGGATCATTTCTGCTTGCACACAGGAGGGAAAGCGGTGATCGACGGCATCGGAATGAGCTTGGATCTGAGAGAGTACGACCTGGAACCTGCGAGGATGACACTTCACCGGTTCGGGAACACGTCAGCAAGTAGCTTGTGGTACGTGCTATCGTACATGGAAGCGAAGAAGAGGCTGAAGAAGGGGGACACGGTGTTCATGATAAGCTTTGGTGCTGGCTTTAAATGTAACAGCTGTTTGTGGGAGGTGATGAAGGACTTGGGTGACGCTAATGTGTGGGACGATTGCATTGATGAGTACCCACCAGAGTCATTGGCCAACCCCTTCATGGAGAAATATGGTTGGATCAACGAAGTGGAGGATCCGTTCACTTACGAACATCTTCCCGAATTTCTCAAGTGA 1413 0.5138 MEFLYLLYLVPTLYACFLIWKMFDERRDRECYILNYQCYKPPNDRMLGSDFCGQLIKRTENLGPSEYRFLLKAIVSSGIGEQTYAPRNIFEGREASPTLRDGIAEMEEFFHDSIGKLLKKSNVSPSEIDVLVVNISMLATIPSLSSQIINHYKMRHDVKVYNLTGMGCSASLISMDIVKNIFKTQSNKLALLITSESLSPNWYTGSDRSMILANCLFRSGGCAILLTNKRSLKDKAMLKLKCLVRTHHGAREEAYGCCIQQEDDQGRLGFHLGKTLPKAATRAFVDNLRVIAPKILPIRELLRFMFVSLIKKINKSNTPKSVASTGATKSPLNFRTGVDHFCLHTGGKAVIDGIGMSLDLREYDLEPARMTLHRFGNTSASSLWYVLSYMEAKKRLKKGDTVFMISFGAGFKCNSCLWEVMKDLGDANVWDDCIDEYPPESLANPFMEKYGWINEVEDPFTYEHLPEFLK 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01541 470 SUPERFAMILY Thiolase-like 243 421 IPR016039 GO:0016746
Pumo11g01541 470 CDD CHS_like 19 418 - -
Pumo11g01541 470 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Pumo11g01541 470 Gene3D - 72 420 IPR016039 GO:0016746
Pumo11g01541 470 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Pumo11g01541 470 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 452 IPR012392 GO:0006633|GO:0016020|GO:0016747
Pumo11g01541 470 PANTHER 3-KETOACYL-COA SYNTHASE 15 439 IPR012392 GO:0006633|GO:0016020|GO:0016747
Pumo11g01541 470 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 338 419 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01541 Pumo-Chr11 46500178 46502196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01541 19 469 Acyl Lipid Metabolism Gene Families AT2G28630 69.935 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01541 K15397 - gmx:100809149 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03938 4 79994984 79996894 Pumo11g01541 11 46500178 46502196 PCT