Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03935 ATGCTCTATGTGGAAAAGGAAATGTCAAATATTATTATAATTATGCAAAAGTCTTCTCTGAACGGTTCTGCTTCAAATCTTCCAGATGGTGCTGGGCGTTCCTTTGCTACGTCATTCTCTGGTTCTATTCAGGGATTGCACAACATTCATGGGAGCTTTAATGTACCCAATATGCCCAGTACACTTACATCAAGAAACTCAACAATAAATAGTGTTCCAACTGGGGGAGGAGTTCAACAACCTTCGGCAAGCCTTTCAAGTGGAAGATTTGCATCAAATAATCTCCCCGTTGCTCTTTCACAGCTATCTCATGGAAGCTCCCATGGACATTCAGGAGTCAACAGTAGAGGAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTCGAATCACTAGTTCGATGGGAAACATGGTTGGTGGGGGGAACATTGGGAGGATAAGCTCTGGAGGGCTGTCTGTTCCAGGTCTTGCTTCTCGTCTAAATTTAAGTGGAAACACTGGATCTGGTGGTTTAGGTGTGCAAGGACAGAATCGGTTGATGAGTGGTGTGCTTCCCCAAGGATCTCCACAGGTAATTTCAATGCTAGGAAATTCCTATCCTAGTGCTGGAGGTCCGCTTTCACAAAGCCATCTTCAAACAGTAAATAACTTGAACTCTATGGGGATGCTGAATGATGTGAATTCCGGTGACAGTTCACCTTTTGACATGAATGACTTCCCTCAACTGACCAGTCGTCCTAGTTCTGCTGGTGGGCCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTCTTGGAGTTAGTCCCATTGTCCAACAAAACCAAGAGTTTAGTATTCAAAATGAAGACTTCCCAGCTTTACCAGGATTCAAAGGTGGTAATTCAGATTTTGCTATGGATATGTACCAGAAAGAACAACTTCATGATAATACCATGTCAATGATGCAATCTCAACATTTCTCCCAGATGGGGAGGTCTGCTGGTTTCAGTTTGGGGGGATCATATCCATCACATCGTACACAACAGCATGCCACTTCGGTCAGTAGCAATGGTGTCTCCTTTTCATCTGTAAACAATCAAGATCTTCTCCATCTGCATGGAACAGATATTTTTCCATCTTCACACTCAACATATCATTCCCAGACCAGTGGACCTCCTGGCATTGGACTAAGGCCTCTAAATTCTCCAAATACGGTTTCTGGTTTGGGTTCATATGACCAGCTGATCCAGCAATATCAACAGCACCAGAACCAGTCCCAGTTCCGCCTTCAGCAAATGTCAGCTGCAAATCAGTCTTTTAGGGATCAGGGCATGAAGTCTATGCAAACTGCACAATCTAATCCAGATCCATTTGGTGCACTTGGCTTGTTCAGTGTGGTCCATATAAGTGATCCTAACCTTAAATATCTTGCTCATGGGATTGATCTTACAACACTTGGGTTGAATTTGAATTCATCAGAAAATCTTTACAAGACTTTTCGGTCTCCTTGGTCTGAAGAACCGGCCAAGGGTGATCCAGAGTTCAGTGTGCTACAATGTTATTATGCTAAACAGCCTCCTGCCCTACATCAAGGTTATTTTTCCAAGTTTTCGGTGGAAACGTTGTTTTACATATTTTACAGCATGCCCAAAGATGAAGCACAACTATATGCGGCAAATGAACTTTACAAACGAGGTTGGTTTTATCATAAAGAGCATCGGTTATGGTTTATAAGAGTTCCCAACATGGAGCCGCTTGTCAAAACAAACACATACGAGAGAGGATCTTACCACTGTTTTGATCCAAGCACTTTTGAAACAGTCCGGAAGGATAATTTTGTTCTTCATTATGAAATGGTGGAAAAGAGACCGTCTGTGCCTCAACTTTGA 1872 0.4295 MLYVEKEMSNIIIIMQKSSLNGSASNLPDGAGRSFATSFSGSIQGLHNIHGSFNVPNMPSTLTSRNSTINSVPTGGGVQQPSASLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRGGLGVSPILGNAGPRITSSMGNMVGGGNIGRISSGGLSVPGLASRLNLSGNTGSGGLGVQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHLQTVNNLNSMGMLNDVNSGDSSPFDMNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNSDFAMDMYQKEQLHDNTMSMMQSQHFSQMGRSAGFSLGGSYPSHRTQQHATSVSSNGVSFSSVNNQDLLHLHGTDIFPSSHSTYHSQTSGPPGIGLRPLNSPNTVSGLGSYDQLIQQYQQHQNQSQFRLQQMSAANQSFRDQGMKSMQTAQSNPDPFGALGLFSVVHISDPNLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSEEPAKGDPEFSVLQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFDPSTFETVRKDNFVLHYEMVEKRPSVPQL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03935 623 PANTHER CCR4 NOT-RELATED 43 617 IPR040168 GO:0030015
Pumo4g03935 623 Pfam NOT2 / NOT3 / NOT5 family 492 613 IPR007282 GO:0006355
Pumo4g03935 623 Gene3D - 442 623 IPR038635 -
Pumo4g03935 623 FunFam probable NOT transcription complex subunit VIP2 isoform X1 442 623 - -
Pumo4g03935 623 MobiDBLite consensus disorder prediction 332 352 - -
Pumo4g03935 623 MobiDBLite consensus disorder prediction 225 262 - -
Pumo4g03935 623 MobiDBLite consensus disorder prediction 225 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03935 Pumo-Chr4 79965727 79971992 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03935 K12605 - gmx:100776413 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03935 4 79965727 79971992 Pumo11g01537 11 46444799 46453852 PCT