Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03901 ATGGGAAGCAGAGTGAACCTTTTGATTTTGTTCCTTGTTCTCTGTCATGGTGTGGCAGTAACAATGGGGTTCTGGAGGACAGAGGTGGAACTGGAAGAGAGAGAAGACGGACCTCCAAGGCCAGACAAGTTGTTCTTGATGCTGAAATCGAAGCACGTGGCCAAAACCGACGCTGGGGAGATGCGAGTGCTAGAGAGCTATGGTGGTAGGATTTCGGAGAGGCGCTTAAACATTGGTTTCATCAATATGGAACCAAGGTCCCTCTTCATTCCTCAGTACCTCGACTCCACTTTGATCATATTCGTGCGTTCAGGGGAAGCAAAGGTGGGATTCATGTATAAAGAGAAGCTGGCGGAAAGGCATTTGAAGATGGGAGATGTGTATCAAATTCCAGCTGGTTCTGCATTCTATCTGGTGAACATAGAGGAGGCTCAAAAGCTTCACATTATCTGCAGCATTGACCCCTCTGAGAGCTTGGGAGTTGATATTTTCCAGTCCTTCTATATTGGAGGAGGAGCCCATCCAGCCTCAGTACTTTCTGGATTCGAGCCTGAAATCCTTGAAACTGCTTTTAACGCATCAGGAGAAGAGTTGCGAAAAATCTTCACTAGGCAACACGAGGGCCCAATTGTGCACGTGGGAGATTCACATGCCACAAGCATATGGACCAAGTTCCTTCAACTTAAGGAGGAAGACAAACTGCAGCACCTGAGGGAGATGGTGCAACAAGAAGAAGAACAAGAAGAGGAAGAGGAATATGGTGATGAAGAAGAAGAGCAGCAAACAAGTTGGTCGTGGAGGAAGCTCTTGGAATCTGTATTCGGGGATGAGATCAAGAACACAAGAGAGAGGGTTACCAGAAAATCCCCTCGCTCTTGCAACCTCTATGACAGAAAGCCAGATTTCAAAAACAACTACGGTTGGAGCGTTGCACTAGATGGCTCTGAGTATTCCCCACTCAAAAGTTCTGGCGTTGGCATTTATCATGTCAATCTCTCAGCGGGATCAATGATGACACCCCATGTGAATCCAAGGGCAACAGAGTATGGCATAGTACTAAAAGGGTCAGGCAGAATCCAAATAGTGTTTCCAAACGGAAGCAACGCAATGGACGCACACATCAAAGAAGGGGACGTGTTCTTCATTCCAAGGTACTTTGCATTCTGCCAAATAGCATCAAGGAACGAACCACTTGAGTTCTTTGGGTTCACCACTTCGGCTCAGAGGAACAGGCCACAATTTCTGGTCGGTGCCACGTCACTCATGAGGACCATGGTGGGGCCCGAGCTTGCCGCTGCATTTGGGGTGAGCGAGGAGACCATGAGGCGCGTCGCTAAGGCCCAACACTGA 1350 0.4822 MGSRVNLLILFLVLCHGVAVTMGFWRTEVELEEREDGPPRPDKLFLMLKSKHVAKTDAGEMRVLESYGGRISERRLNIGFINMEPRSLFIPQYLDSTLIIFVRSGEAKVGFMYKEKLAERHLKMGDVYQIPAGSAFYLVNIEEAQKLHIICSIDPSESLGVDIFQSFYIGGGAHPASVLSGFEPEILETAFNASGEELRKIFTRQHEGPIVHVGDSHATSIWTKFLQLKEEDKLQHLREMVQQEEEQEEEEEYGDEEEEQQTSWSWRKLLESVFGDEIKNTRERVTRKSPRSCNLYDRKPDFKNNYGWSVALDGSEYSPLKSSGVGIYHVNLSAGSMMTPHVNPRATEYGIVLKGSGRIQIVFPNGSNAMDAHIKEGDVFFIPRYFAFCQIASRNEPLEFFGFTTSAQRNRPQFLVGATSLMRTMVGPELAAAFGVSEETMRRVAKAQH 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03901 449 MobiDBLite consensus disorder prediction 244 259 - -
Pumo4g03901 449 Gene3D Jelly Rolls 40 224 IPR014710 -
Pumo4g03901 449 Gene3D Jelly Rolls 284 449 IPR014710 -
Pumo4g03901 449 Pfam Cupin 294 441 IPR006045 -
Pumo4g03901 449 Pfam Cupin 51 197 IPR006045 -
Pumo4g03901 449 CDD cupin_7S_vicilin-like_C 300 448 - -
Pumo4g03901 449 SMART Cupin_1_3 45 199 IPR006045 -
Pumo4g03901 449 SMART Cupin_1_3 293 442 IPR006045 -
Pumo4g03901 449 CDD cupin_7S_vicilin-like_N 53 213 - -
Pumo4g03901 449 MobiDBLite consensus disorder prediction 240 262 - -
Pumo4g03901 449 Coils Coil 226 260 - -
Pumo4g03901 449 SUPERFAMILY RmlC-like cupins 36 448 IPR011051 -
Pumo4g03901 449 PANTHER OS03G0336100 PROTEIN-RELATED 8 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03901 Pumo-Chr4 79446214 79448039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03901 77 448 Miscellaneous Gene Families AT2G18540 29.091 5.53e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03901 - - gmx:100818796 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03901 4 79446214 79448039 Pumo4g03901 4 79446214 79448039 ECH
Pumo4g03901 4 79446214 79448039 Pumo11g01500 11 45858234 45861197 PCT