Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01500 ATGGGAAACAAAACCACCCTTTTGCTCTTCCTCTTTGTTCTCTGCATTGGAGTGGCCACAGCAATGGCCTTCCATGAAGGTGAAGATTGGTGGACAGAGTCACCAAAAAATTTGTTCTTGATGCGCAACTTCAAGAGAGTGTTCAAGACTGATGCAGGGGAAATGCGTGTAATGAAAAGCCATAGTGGTAGGATTTTGGATAGGCACATGCACATTGGCTTCATCAATATGGAACCAAAGTCCTTGTTTGTTCCTCAGTACCTTGACTCCAATCTCATCATATTCATCCGTAGAGGGGAAGCAAAGTTGGGATTCATATATGATGATGAACTAGCGGAAAGGCGATTGAAGACAGGGGACGTGTACATGATTCCATCTGGTTCAGCATTCTATTTGGTGAACATAGGAGAAGGTCAGAGACTTCACGTCATCTGCAGCATTGACCCTTCTACAAGCTTGGGATTAGATACCTTCCAGTCCTTCTATATTGGAGGAGGAGCCAATTCACATTCAGTGCTTTCTGGATTCGAACCTGCGATCCTTGAAACTGCATTTAATGAATCAAGAACGGTGGTAGAGCAAATCTTCTCCAAGGAACTAGGTGGGCCAATTATGTTCGTGGGTGATTCTCATGCACCCAACTTATGGACTAAATTCCTTCAACTGAAGAAGGAAGACAAAGAGCAACAGCTGAAGAAAATGGTGCAAGACCAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGAAGCAAGCAAGGAACAAAGACGCTGCTGGTTCCCCTGACTCTTACAACCTCTATGACAAAAAAGCTGATTTCAGAAACGCTTATGGTTGGAGCAAGGAACTGCATGGAGGCGAGTATCCTCCACTCAGCAAACCTGACATTGGCGTTTTCCATGTCAATCTCACAGCGGGATCCATGATGGCACCTCATGTGAATCCAATAGCCACTGAGTATGGCATAGTGCTGAGTGGTTATGGTGAACTTCATATAGTGTTTCCAAACGGAAGCAAAGCAATGAACACCAAAATCAAACAAGGGGACGTGTTTATTGTGCCAAGATACTTCCCCTTCTGTCAAATAGCATCAAGGGATGGACCCTTAGAGTTCTTTGGGTTCTCCACCTCTGCCAGGAAGAACAAGCCACAGTTTCTGGCTGGTGCTGTGTCCCTTCTTAGGACCATGATGGGGCCTGAGCTTGCGGCGGCGTTCGGGGTGAGTGAGGACACACTGCGGCGCGCCTTTGATGCTCAGCGTGAGGCTGTGATCCTGCCATCAACATGGGCTGCACTACCAGGATGA 1302 0.4685 MGNKTTLLLFLFVLCIGVATAMAFHEGEDWWTESPKNLFLMRNFKRVFKTDAGEMRVMKSHSGRILDRHMHIGFINMEPKSLFVPQYLDSNLIIFIRRGEAKLGFIYDDELAERRLKTGDVYMIPSGSAFYLVNIGEGQRLHVICSIDPSTSLGLDTFQSFYIGGGANSHSVLSGFEPAILETAFNESRTVVEQIFSKELGGPIMFVGDSHAPNLWTKFLQLKKEDKEQQLKKMVQDQEEEEEEEEEEKQARNKDAAGSPDSYNLYDKKADFRNAYGWSKELHGGEYPPLSKPDIGVFHVNLTAGSMMAPHVNPIATEYGIVLSGYGELHIVFPNGSKAMNTKIKQGDVFIVPRYFPFCQIASRDGPLEFFGFSTSARKNKPQFLAGAVSLLRTMMGPELAAAFGVSEDTLRRAFDAQREAVILPSTWAALPG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01500 433 Coils Coil 217 255 - -
Pumo11g01500 433 PANTHER OS03G0336100 PROTEIN-RELATED 6 427 - -
Pumo11g01500 433 Gene3D Jelly Rolls 255 427 IPR014710 -
Pumo11g01500 433 SMART Cupin_1_3 36 193 IPR006045 -
Pumo11g01500 433 SMART Cupin_1_3 263 412 IPR006045 -
Pumo11g01500 433 Pfam Cupin 45 145 IPR006045 -
Pumo11g01500 433 Pfam Cupin 263 409 IPR006045 -
Pumo11g01500 433 MobiDBLite consensus disorder prediction 230 265 - -
Pumo11g01500 433 CDD cupin_7S_vicilin-like_C 271 421 - -
Pumo11g01500 433 CDD cupin_7S_vicilin-like_N 47 207 - -
Pumo11g01500 433 Gene3D Jelly Rolls 32 220 IPR014710 -
Pumo11g01500 433 SUPERFAMILY RmlC-like cupins 7 421 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01500 Pumo-Chr11 45858234 45861197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01500 44 424 Miscellaneous Gene Families AT4G36700 28.426 1.64e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01500 - - gmx:547942 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03901 4 79446214 79448039 Pumo11g01500 11 45858234 45861197 PCT