Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03842 ATGGCCAAGCTCAGTCTCAGCAGCAGCAAAAAGAAGAGTGTAGGTGGCATTGTGAAGTTCAAATTCGTCGTTGAGAAGCTCCAAAAGAGACTCTTACTGGGGAGAAACAAAGATGGGTATGATTCAAACTCAACAACCTATGTGCCAGAGGACGTGAAGGAGGGACACTTCGCTGTGATTGCTGAGGGTGGACAGGAACAAAAGAGGTTCGTGCTGCCACTAAGCTGTTTAACAAACCCAACGTTTTTGAAGCTATTGGAGCAAGCAGAAGAAGAGTATGGGTTTGATCATGATGGTGCAGTAACCATTCCTTGCAGGCCTTGTGAACTTGAGAGGATACTGGCTCTGCAGCAATGGCATCAAGAGGGAACTACTCAAACTACTACTGGACCAAGGTGGACTTGTAGAAAATCCATAGTATTTTAA 426 0.4531 MAKLSLSSSKKKSVGGIVKFKFVVEKLQKRLLLGRNKDGYDSNSTTYVPEDVKEGHFAVIAEGGQEQKRFVLPLSCLTNPTFLKLLEQAEEEYGFDHDGAVTIPCRPCELERILALQQWHQEGTTQTTTGPRWTCRKSIVF 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03842 141 Pfam Auxin responsive protein 43 115 IPR003676 GO:0009733
Pumo4g03842 141 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 32 114 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03842 Pumo-Chr4 78692152 78692634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03842 7 125 Calmodulin-binding Proteins AT3G43120 36.885 8.20e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03842 - K14488 gmx:102668167 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03842 4 78692152 78692634 Pumo4g03842 4 78692152 78692634 ECH
Pumo4g03842 4 78692152 78692634 Pumo11g01418 11 44486310 44486678 PCT