Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03832 ATGCCATTGTTAACAACTTCCTCTTTGTTCTACATGGTTCCTCTCTTCTCTCTTCTTTTATTCTCACTCATGATTCCTTATAGTACTTCTCAGGGTCCACCTTCACCTGGCTACTACCCTAGTTCCAAAATTAGTCCTGTTAGCTTTGATGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAAAATAGACCAAGACTCATTAACAATCTGGCTTGACACTTACTCAGGGAGTGGATTCAAGTCACTTCACTGTTATCGATCTGGATATTTTGGTGCTGCGATTAAGCTTCAACCTGGTTACACTGCTGGAGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCAGGACACCATGATGAGATAGACATTGAGTTCCTTGGTACCACGCCAGATAAGCCATATATCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAATATTATAGGGAGAGAGATGAGGATTCACCTTTGGTTCGACCCAACACAAGATTTTCACAACTATGCTATTCTGTGGGAACCCAGTGAGATCATATTTTTAGTGGATGATGTCCCAATAAGGAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCACAAGAGAAATGTATGTGTACGGATCAATATGGGATGCATCTTCATGGGCTACAGAGGGAGGAAAATACAAAGCTGATTATAGTTACCAACCCTTCACTGGTAGATACAAAAACTTCAAAATACAAGGTTGTACCACTGAAGCCTCCACCTCATGCCAGCCACCATCTCCTTCACCATCAGGCTATGGCAACCTTAGCCCTCAGCAACTTGCTGCAATGCAATGGGTCCAAAACAACTACTTGGTCTATGACTATTGCCATGATCCTGGGAGAGACCATACACTTACTCCAGAATGCTAA 912 0.4287 MPLLTTSSLFYMVPLFSLLLFSLMIPYSTSQGPPSPGYYPSSKISPVSFDEGFRNLWGPQHQKIDQDSLTIWLDTYSGSGFKSLHCYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDYPGHHDEIDIEFLGTTPDKPYILQTNVYIRGSGDGNIIGREMRIHLWFDPTQDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPTREMYVYGSIWDASSWATEGGKYKADYSYQPFTGRYKNFKIQGCTTEASTSCQPPSPSPSGYGNLSPQQLAAMQWVQNNYLVYDYCHDPGRDHTLTPEC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03832 303 PIRSF EndGlu_transf 10 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo4g03832 303 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 48 303 IPR044791 GO:0004553
Pumo4g03832 303 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 303 IPR013320 -
Pumo4g03832 303 Gene3D - 29 303 - -
Pumo4g03832 303 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 303 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pumo4g03832 303 Pfam Glycosyl hydrolases family 16 51 232 IPR000757 GO:0004553|GO:0005975
Pumo4g03832 303 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 28 240 IPR000757 GO:0004553|GO:0005975
Pumo4g03832 303 FunFam Xyloglucan endotransglucosylase/hydrolase 36 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03832 Pumo-Chr4 78570624 78572228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03832 16 303 Glycoside Hydrolase AT3G44990 67.354 3.34e-141 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03832 K08235 - gmx:100796768 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03832 4 78570624 78572228 Pumo4g03832 4 78570624 78572228 ECH
Pumo4g03832 4 78570624 78572228 Pumo11g01408 11 44301242 44303578 PCT