Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01408 ATGCCATCATCACTATCCTCTTTCCTCCATATGGTTCCTATTCTCTCCCTTCTTGTACTCTCATGTATGATTTGTTCTAGTAGTGCTCAGGGACCACCTTCACCTGGCTACTACCCCAGTTCCAACATTAGTCCTGTTAGTTTTTATCAAGGGTTTAGAAACCTCTGGGGAGCTCAGCATCAGAGACTAGACCAAGGCTCATTAACAATATGGCTTGACTCTAGCTCAGGGAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTGCCATTAAGCTTCAACCTGGTTACACTGCAGGAGTCATTACATCTTTATATCTTTCAAACAACCAAGACCACCCCGGAAACCATGATGAAATTGACATTGAGTTTCTTGGCACCACGCCAGATAAGCCATATGTCTTGCAGACAAATGTATACATAAGAGGAAGTGGAGATGGGAATATTATAGGAAGAGAGATGAAGTTTCATCTTTGGTTTGACCCAACACAGGATTTTCACAACTATGGCATTCTATGGAAACCCAGTGAGATCATATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGATGCCACGTACCCCTCAAGGCCAATGTATGTGTACGGGTCAATATGGGATGCATCTTCTTGGGCAACAGAGGATGGAAAATACAAAGCTAATTATAATTACCAACCCTTCATTGGTAGGTATAAAAACTTCAAACTGCAAGGTTGCACTAGTGAAAGCTCTGCCTCATGCCAGCCACCTTCTGCCTCGCCATCTGGCTTTGGTAGTCTGAGCCCTCAGCAGTTTAGGGCCATGCAATGGGTCCAAAACAACTACATGGTCTACAATTATTGCCATGACCCTAGAAGAGACCACACACTTATCCCAGAGTGTTAG 909 0.4378 MPSSLSSFLHMVPILSLLVLSCMICSSSAQGPPSPGYYPSSNISPVSFYQGFRNLWGAQHQRLDQGSLTIWLDSSSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMKFHLWFDPTQDFHNYGILWKPSEIIFFVDDVPIRRYPRKSDATYPSRPMYVYGSIWDASSWATEDGKYKANYNYQPFIGRYKNFKLQGCTSESSASCQPPSASPSGFGSLSPQQFRAMQWVQNNYMVYNYCHDPRRDHTLIPEC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01408 302 PIRSF EndGlu_transf 7 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo11g01408 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pumo11g01408 302 FunFam Xyloglucan endotransglucosylase/hydrolase 35 302 - -
Pumo11g01408 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 302 IPR013320 -
Pumo11g01408 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 239 IPR000757 GO:0004553|GO:0005975
Pumo11g01408 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 41 302 IPR044791 GO:0004553
Pumo11g01408 302 Pfam Glycosyl hydrolases family 16 50 231 IPR000757 GO:0004553|GO:0005975
Pumo11g01408 302 Gene3D - 28 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01408 Pumo-Chr11 44301242 44303578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01408 15 302 Glycoside Hydrolase AT3G44990 67.698 1.22e-144 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01408 K08235 - gmx:100781528 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03832 4 78570624 78572228 Pumo11g01408 11 44301242 44303578 PCT