Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03808 ATGGCGGCGGCTGCTTTTGCTATCTCCGTCGCGCTGTTGGCGGCGGTGGTGAGTGAGCTGAGAGCTCGCGACGCGTTGAGGCATCGCAGAATTTTGCAGTCTTCAAACGGCGTCGATTTCCCCGTTCAAGGCACCTTCGATCCTTTCAAAGTCGGATTGACACTGGCACTGATATTCTCTGGGTTAGTTGCTGCCCCTGCGATGGTTGTCCTCAAACAAGTGGTCTTAAGTTGTAGCAACCAGCAGAGTGGGGGCTTGACAAGGTCTCTTAGCGCAGTTGATGGGATATTTGGATTTGGGCAACAGGGAATGTCTGTCATCTCCCAGCTCTCCTCACAAGGGATTGCTCCAAGAGTATTCTCACATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTTTTGGAGAGATTGTGGAGCCAAGCATAGTTTACACTTCACTTGTTCCAGAAAAGTAA 462 0.5043 MAAAAFAISVALLAAVVSELRARDALRHRRILQSSNGVDFPVQGTFDPFKVGLTLALIFSGLVAAPAMVVLKQVVLSCSNQQSGGLTRSLSAVDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVFGEIVEPSIVYTSLVPEK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03808 153 SUPERFAMILY Acid proteases 67 150 IPR021109 -
Pumo4g03808 153 Pfam Xylanase inhibitor N-terminal 68 137 IPR032861 -
Pumo4g03808 153 PANTHER ASPARTYL PROTEASES 70 151 IPR001461 GO:0004190|GO:0006508
Pumo4g03808 153 Gene3D Acid Proteases 52 138 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03808 Pumo-Chr4 78262724 78266060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03808 74 144 Miscellaneous Gene Families AT1G44130 36.620 3.19e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03808 - - gmx:100795803 135.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03808 4 78262724 78266060 Pumo4g03808 4 78262724 78266060 ECH
Pumo4g03808 4 78262724 78266060 Pumo11g01374 11 43849297 43853862 PCT