Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01374 ATGGAAACGGTGGCCGCCGCTTTTCTCTTCGCCGCCGTGCTTCTGTCGGCGGTTGCCGGGTCGCCGGTGACTCTGACGCTGGAAAGAGCGTTCCCTACGAATCACGGCGTGGAATTGAGTGAGCTCAGAGCGAGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTACGTTGTAGATTTCCCTGTCAAAGGCACCTTCGATCCCTCACAAGTCGGGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTTTATGTGCAGATTGACACTGGGAGTGATGTTCTCTGGCTTAGTTGTGGGTCCTGCAATGGTTGTCCTCAGACAAGTGGGCTCCAAATTCAGCTCAATTACTTTGACCCTGGGAGTTCATCAACATCTTCGTTGATCTCTTGTTCGGACCGAAGGTGCAGGAGTGGAGTACAGTCCTCGGATGCAAGCTGTTCCGGTCAGAACAACCAGTGCACTTACACATTTCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTCTCAGACTTGATGCATTTTGCTAGTATATTTGAGGGAGCCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGTTGTAGCATCCTGCAGACTGGGGACTTAGCAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAAGGCATGTCTGTCATTTCCCAACTTGCATCGCAAGGAATAGCACCAAGAGTGTTCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCCATCACAGCCTCATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTTTGCCAATTGCCCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCCGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACACTACCTTTGTCAATGCGATTACAGCTACTATTCCACAATCTGTACGCAGTGTTCTTTCCAGGGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTTCCGCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGACTACCTTATGCAGCAGAATTATATTGGTGAGGGATCAGTGTGGTGTATTGGCTTTCAGAAAATTCCGGGTCAAAGTATAACTATTCTAGGAGACCTCGTATTAAAAGACAAAATTTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCCAACTATGATTGTTCATTGCCGGTTAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGTTTGTGGACGCAGGAGAGCTAAGTGGCAGCTCTTGTTTACGTGATGGGCCTCACATGTTGATAAAGACACTGTTTCTTGCTCTCTTCATGCACATAACACAAATTTTGTAG 1470 0.4578 METVAAAFLFAAVLLSAVAGSPVTLTLERAFPTNHGVELSELRARDSLRHRRMLQSTNYVVDFPVKGTFDPSQVGLYYTKVKLGTPPREFYVQIDTGSDVLWLSCGSCNGCPQTSGLQIQLNYFDPGSSSTSSLISCSDRRCRSGVQSSDASCSGQNNQCTYTFQYGDGSGTSGYYVSDLMHFASIFEGALTTNSSASVVFGCSILQTGDLAKSDRAVDGIFGFGQQGMSVISQLASQGIAPRVFSHCLKGDNSGGGVLVLGEIVEPNIVYSPLVPSQPHYNLNLQSISVNGQILPIAPAVFATSNNRGTIVDSGTTLAYLAEEAYTTFVNAITATIPQSVRSVLSRGNQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQDYLMQQNYIGEGSVWCIGFQKIPGQSITILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASAGRGRSEFVDAGELSGSSCLRDGPHMLIKTLFLALFMHITQIL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01374 489 Gene3D Acid Proteases 51 263 IPR021109 -
Pumo11g01374 489 Gene3D Acid Proteases 264 442 IPR021109 -
Pumo11g01374 489 FunFam Aspartic proteinase-like protein 2 60 263 - -
Pumo11g01374 489 CDD pepsin_A_like_plant 77 437 IPR034161 -
Pumo11g01374 489 Pfam Xylanase inhibitor C-terminal 280 433 IPR032799 -
Pumo11g01374 489 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Pumo11g01374 489 SUPERFAMILY Acid proteases 74 439 IPR021109 -
Pumo11g01374 489 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Pumo11g01374 489 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Pumo11g01374 489 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Pumo11g01374 489 FunFam Aspartic proteinase-like protein 2 264 444 - -
Pumo11g01374 489 PANTHER ASPARTYL PROTEASES 15 431 IPR001461 GO:0004190|GO:0006508
Pumo11g01374 489 ProSiteProfiles Peptidase family A1 domain profile. 77 433 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01374 Pumo-Chr11 43849297 43853862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01374 51 438 Miscellaneous Gene Families AT1G44130 25.679 4.57e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01374 - - gmx:100811632 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03808 4 78262724 78266060 Pumo11g01374 11 43849297 43853862 PCT