Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03802 ATGGCTTCGTCGCGAGTAGATCTGGACGGGAACCCCATAAAGCCAATCACCATCTGCATGATTGGCGCCGGTGGCTTCATCGGGTCCCACCTCTGCGAGAAGCTCATGTCGGAAACCCCTCACAAGGTTCTCGCCTTGGATGTCTACAATGACAAGATCAAACACCTCCTCGAACCCGACACGCTCCCATGGGCCGGTCGCATCCAATTCCACCGCCTCAACATCAAGCAAGATTCCCGACTCGAAGGCCTCATCAAAATGGCAGATCTGACCATTAATCTCGCTGCTATTTGCACTCCTGCGGATTACAACACGCGCCCTTTGGACACCATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCGGAGAACAACAAGCGTCTCATTCATTTCTCTACCTGTGAAGTGTATGGGAAAACGATTGGAGCCTTCCTCCCCAAAGATAGTCCTCTTCGTCAGGATCCTGCATACTATGTACTTAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCCTGTGCTAAGCAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGGCTTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGCGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAATCCCAGAGGACTTTTGTGTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCTGCCAGGGCCAATGGACATATTTTTAATGTGGGAAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGGTTTATTCAAAGGTAAGTGGAGAAGCACCTCTGGAAAAACCTACTATTGATGTGAGCTCCAAAGAATTTTATGGTGAAGGATATGATGACAGTGACAAGAGAATTCCTGACATGACCATAATTAATAGGCAACTTGGCTGGAATCCTAAGACCTCACTTTGGGACCTGCTTGAATCCACTCTCACCTATCAGCACAGGACTTACGCTGAAGCCATAAAGAAAGTCATTGCAAAGCCAGTGGCAAGTTAA 1164 0.4708 MASSRVDLDGNPIKPITICMIGAGGFIGSHLCEKLMSETPHKVLALDVYNDKIKHLLEPDTLPWAGRIQFHRLNIKQDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGAFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTQVYSKVSGEAPLEKPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03802 387 Gene3D - 16 378 - -
Pumo4g03802 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 17 372 - -
Pumo4g03802 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
Pumo4g03802 387 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 16 379 - -
Pumo4g03802 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
Pumo4g03802 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03802 Pumo-Chr4 78190734 78193710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03802 16 382 Miscellaneous Gene Families AT1G02000 21.357 6.27e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03802 K12449 - gmx:100792879 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03802 4 78190734 78193710 Pumo4g03802 4 78190734 78193710 ECH
Pumo4g03802 4 78190734 78193710 Pumo11g01368 11 43764904 43767924 PCT