Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03725 ATGATTTCATCGCAAACAAAACAATCCTTCGGTTCACTCTTCCTGCTTTTCGTTGTGCTGTTGCAGAAACGATTCCAGATGGGCCTCATCGATCAAGACCCTAATTCGAAGCCGATCGTGATCCGCGAGGTCTGGGCCTCCAACCTCGAATCCGAATTCGAGGTGATTCGTGAAGTGATCGACGATTACCCTTTCATCTCCATGGACACCGAGTTTCCGGGCGTTATTTTTCGCCCCCACGTGGTGGATCCCACAAAACCATACCTCCGCGGCCACCTCCAACCATCCGACCACTACCGCTTCCTCAAGTCCAACGTTGACGCCCTCAACCTTATCCAGGTCGGCCTCACTCTCTCCGATGCCGATGGCAACCTCCCTCATCTCGGAACCGGAAACCGCTTCATTTGGGAATTCAACTTCAGTGACTTCAACCTCGAGCGTGACGCCCACGCGCCTGACTCCATCGATCTCCTCCGCCGCCAAGGCATCGACTTCCGGCCGCAACGCGGCGGAAGGCATAGACTCATCGCGGTTTCGCGGAACTCCGCGTACGATTTCGGGTATTTGGTTAAGATCCTGACCCGACGGAGCCTGCCCCATGGGTTAGAGGAATTCTTGAAGATGTTGAGGGCGTTTTTCGGGAACAACGTTTACGACATCAAGCACATGATGCGCTTCTGTGACACCCTCTATGGCGGTTTGGACCGGCTCGCGCAAACCCTTGACGTGGACCGGGCGGTTGGGAAGTGTCACCAGGCCGGGTCCGACAGCTTGCTGACGTGGCACGCGTTTCAGAAGATGAGGGATATTTATTTCGTGAAGGATGGGCCCCAGAAACATGCCGGCGTTTTGTTTGGATTGGAACTCACTTGTTCTGCCAGTTGA 885 0.548 MISSQTKQSFGSLFLLFVVLLQKRFQMGLIDQDPNSKPIVIREVWASNLESEFEVIREVIDDYPFISMDTEFPGVIFRPHVVDPTKPYLRGHLQPSDHYRFLKSNVDALNLIQVGLTLSDADGNLPHLGTGNRFIWEFNFSDFNLERDAHAPDSIDLLRRQGIDFRPQRGGRHRLIAVSRNSAYDFGYLVKILTRRSLPHGLEEFLKMLRAFFGNNVYDIKHMMRFCDTLYGGLDRLAQTLDVDRAVGKCHQAGSDSLLTWHAFQKMRDIYFVKDGPQKHAGVLFGLELTCSAS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03725 294 Pfam CAF1 family ribonuclease 44 166 IPR006941 -
Pumo4g03725 294 Gene3D - 172 287 IPR036397 GO:0003676
Pumo4g03725 294 Gene3D - 40 171 IPR036397 GO:0003676
Pumo4g03725 294 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 39 288 IPR039637 GO:0004535|GO:0030014
Pumo4g03725 294 SUPERFAMILY Ribonuclease H-like 40 286 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03725 Pumo-Chr4 77028050 77028990 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03725 K12581 - gmx:100781759 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03725 4 77028050 77028990 Pumo4g03725 4 77028050 77028990 ECH
Pumo4g03725 4 77028050 77028990 Pumo11g01273 11 42345080 42346176 PCT