Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03621 ATGTCCAAGATGTTGGGAGTGTTTGTGGGTCTTTTGTTGGTGGGGTTGGCTGCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATTCAAGAAGGAGAACTCCTCAAACTCAAACTCGATAACTATTCTGGTGCTGGATTTGGATCCAAGAGCAAGTATATGTTTGGGAAAGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACCGTTACTGCTTTCTATATGTCATCAGACGGTCCAACTCACAACGAATTTGATTTCGAATTTCTGGGCAACACCACTGGGGAACCTTACTCAGTCCAAACAAACCTGTATGTGAATGGGGTCGGTAACAGAGAGCAGAGACTCAATCTCTGGTTCGACCCCACCAAGGACTTCCACACCTATTCCATCTTCTGGAACCAGCGCCAAGTTGTATTCCTAGTGGATGAGACGCCAATAAGGGTTCACACAAACCTAGAACACAAGGGCATTCCCTTCCCGAAGGACCAAGCCATGGGTGTATACAGCTCTATATGGAACGCAGATGATTGGGCCACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCATTGCCACCTACAAGGACTTCCAAATCGATGCGTGCGAGTGCCCCGTGCCAGTGACGTCAGCGGATAGCGCTAAGAAATGTAACAGCAGTGAGGACAAGAAGTACTGGTGGGACGAACCAACATTGTCTGAACTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGGTCTATGACTATTGCACCGACACTGCTAGGTTCCCCGTTATACCTGCTGAGTGTGTTCACCACCGTCACCACTGA 870 0.4966 MSKMLGVFVGLLLVGLAASAKFDELFQPSWAMDHFIQEGELLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNLYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKDFQIDACECPVPVTSADSAKKCNSSEDKKYWWDEPTLSELNLHQSHQLMWVRANHMVYDYCTDTARFPVIPAECVHHRHH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03621 289 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 283 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pumo4g03621 289 FunFam Xyloglucan endotransglucosylase/hydrolase 9 285 - -
Pumo4g03621 289 CDD GH16_XET 17 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo4g03621 289 PIRSF EndGlu_transf 1 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo4g03621 289 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 287 IPR013320 -
Pumo4g03621 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 19 283 IPR044791 GO:0004553
Pumo4g03621 289 Gene3D - 13 289 - -
Pumo4g03621 289 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 208 IPR000757 GO:0004553|GO:0005975
Pumo4g03621 289 Pfam Glycosyl hydrolases family 16 25 200 IPR000757 GO:0004553|GO:0005975
Pumo4g03621 289 PRINTS Glycosyl hydrolase family 16 signature 128 145 IPR008264 GO:0004553|GO:0005975
Pumo4g03621 289 PRINTS Glycosyl hydrolase family 16 signature 110 123 IPR008264 GO:0004553|GO:0005975
Pumo4g03621 289 PRINTS Glycosyl hydrolase family 16 signature 52 70 IPR008264 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03621 Pumo-Chr4 75145444 75148263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03621 52 288 Glycoside Hydrolase AT4G03210 79.747 6.43e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03621 K08235 - gmx:100801567 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01179 11 41049620 41050063 Pumo4g03621 4 75145444 75148263 PCT