Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01179 ATGTTTTTTTATGTGGTTAGATTTTTGGTGGATGAAACGCCAATAAGGGTGCACACAAATATGGAGCACAAGGGAATTCCTTTTCCTAAGGACCAACCGATGGGTGTGTACAGTTCTATATGGAATGCTGATGATTGGGCCACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCATAGCCAGCTACAAGAACTTTGAGATCAATGCGTGTGAGTGTCCTGTGTCAGTGGCTGCAATGGATAATGCTAAGAGGTGCACCAGCAGTGAGGGCAAGAAGTATTGGTGGGATGAGCCCAATTTGGCTGAACTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAAGGCCAGGCACATTTTCTATGACTATTGCACTGACAATGCTAGGTTCCCAGTCACGCCTGCTGAGTGTGTCCATCACCGTCACAACTGA 444 0.482 MFFYVVRFLVDETPIRVHTNMEHKGIPFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKNFEINACECPVSVAAMDNAKRCTSSEGKKYWWDEPNLAELNLHQSHQLMWVKARHIFYDYCTDNARFPVTPAECVHHRHN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01179 147 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 94 141 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pumo11g01179 147 Pfam Glycosyl hydrolases family 16 6 58 IPR000757 GO:0004553|GO:0005975
Pumo11g01179 147 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 145 IPR013320 -
Pumo11g01179 147 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 66 IPR000757 GO:0004553|GO:0005975
Pumo11g01179 147 Gene3D - 4 147 - -
Pumo11g01179 147 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 6 141 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01179 Pumo-Chr11 41049620 41050063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01179 6 146 Glycoside Hydrolase AT4G03210 66.667 2.46e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01179 K08235 - gmx:100786906 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01179 11 41049620 41050063 Pumo4g03621 4 75145444 75148263 PCT