Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03617 ATGCCTGAAGCTCCAAAGCACTTATGCCACGAGCCAAAGGATAACAACCTTGATAATGATGGTAGTAACACTAGTAACAACAACAAGAGAGCACTCGAATACATTGAAGAGGTCACCACCAACGCTGATGAAATTCAAGAAACGGTGCTTGCTCAGATCCTTTCTAGTAGTGCCAACGCTGAGTACCTCCAACGCCATGGCCTAGAAGGGCGCACTGACAGAAACACTTTCAAGAAGATCGTGCCTGTGGTCACTTACGAGGATTTAAAGCCAGATATTGATCGTATAGCCAACGGTGATACCTCACCAATTTTATGCTCCAAACCCATATCAGAGTTCCTCACTAGCTCTGGAACGTCTGGTGGGGAGAGAAAATTGATGCCAACCATAGAAGAGGAGCTAGAGAGGAGATCATTGCTTTATAGCCTCTTGATGCCGGTGATGGATCAGTTTGTGCCCGGTTTGGACAAAGGCAAAGGCATGTACTTTTTGTTCACAAAATCCGAAGCCAAAACCCCAGGTGGGCTCCTTGCTCGTCCCGTTTTGACCAGCTATTACAAAAGTACACATTTCAAGCACCGCAAACACGATCCCTACACAAACTACACAAGCCCCAACGAAACCATTCTCTGCCCTGACTGTTACCAAAGCATGTACTCTCAGTTGCTTTGTGGCCTTTGCCAAAACGAGGAAGTTCTTCGTGTTGGGGCCGTCTTCGCCTCCGGTTTCATTCGTGCCCTTAAGTTCCTCGAAAAACACTTCGTTGGTTTGTGCAATGACATAAGAAGGGGTACCTTAGACCCCAAAATCACTGACCCCTTTGTTAGAGAGGCCGTTATGAAAGTACTTAAACCAAATCCCACGCTTGCGGATTTCATTGAAGCTGAATGTGTGAAGGGGTCATGGAAGGGAATTATTACTAGGATATGGCCTAACACTAAGTATGTTGATGTTATTGTCACGGGAACTATGTCTCAGTACATTCCCATATTGGATTATTATAGCAATGGTCTCCCTCTTGTGTGCACCATGTATGCTTCTTCTGAGTGCTATTTTGGCCTCAATTTGAACCCCTTGTGTGACCCAAGTGAGGTGTCTTACACCCTTATTCCCACCATGGCCTACTTTGAGTTCTTGCCCCTCGATGGGATCAATGGACATACTAATTCAATTTCTCACCTAGAGCAAGAACATTTGGTAGATCTTGCAGATGTGAAGTTGGGTCAAGAGTACGAGCTTGTGGTCACCACTTATGCAGGACTTTATAGATACCGGGTTGGTGACATTCTCCGTGTAGCCGGATTCAAGAACAAGGCTCCTCAATTCAACTTCGTGTGCCGAAAGAACGTGGTTCTGAGCATTGATTCCGACAAAACCGACGAAGTTGAGCTACAAAATGCTGTCAATAGTGGAGCTGACCATCTTGCTCAATTTGGTGCATCTCTAACAGAATACACCAGCTGCGTGGACACATCAACCATCCCTGGCCACTACGTTCTGTACTGGGAAATTAGCACCAATGGCCAAACCCCAACAATTCCTTCTTCAGTTTTCGGGCATTGTTGCCTTGCAATTGAGGAATCACTAAACAGCGTGTATCGCCAAGGCAGGGTATCAGAGTCTATTGGACCCTTGGAAATCAAGGTGGTTGAGAATGGCACATTTGATAAGCTTATGGACTTTGCTATCAGCCAAGGTGCGTCCATTAACCAATACAAGACACCTCGCTGCGTGACATATGCGCCCATTCTGGACCTTCTAAACTCTAAAGTTGTTTCCAATTACTTTAGCCCAAAATGCCCAAATTGGGTTCCTGGTCACAAGGACTGGTGCACTCTTCATTGA 1845 0.458 MPEAPKHLCHEPKDNNLDNDGSNTSNNNKRALEYIEEVTTNADEIQETVLAQILSSSANAEYLQRHGLEGRTDRNTFKKIVPVVTYEDLKPDIDRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMDQFVPGLDKGKGMYFLFTKSEAKTPGGLLARPVLTSYYKSTHFKHRKHDPYTNYTSPNETILCPDCYQSMYSQLLCGLCQNEEVLRVGAVFASGFIRALKFLEKHFVGLCNDIRRGTLDPKITDPFVREAVMKVLKPNPTLADFIEAECVKGSWKGIITRIWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCDPSEVSYTLIPTMAYFEFLPLDGINGHTNSISHLEQEHLVDLADVKLGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVNSGADHLAQFGASLTEYTSCVDTSTIPGHYVLYWEISTNGQTPTIPSSVFGHCCLAIEESLNSVYRQGRVSESIGPLEIKVVENGTFDKLMDFAISQGASINQYKTPRCVTYAPILDLLNSKVVSNYFSPKCPNWVPGHKDWCTLH 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03617 614 Pfam GH3 auxin-responsive promoter 35 579 IPR004993 -
Pumo4g03617 614 MobiDBLite consensus disorder prediction 1 17 - -
Pumo4g03617 614 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 28 600 IPR004993 -
Pumo4g03617 614 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03617 Pumo-Chr4 75108980 75112375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03617 22 597 EF-hand Containing Proteins AT1G23160 50.598 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03617 K14487 - gmx:100806653 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03617 4 75108980 75112375 Pumo4g03617 4 75108980 75112375 ECH
Pumo4g03617 4 75108980 75112375 Pumo11g01159 11 40356454 40361301 PCT