Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03585 ATGGCGGCTCTCACTTCTCTCTCTTTCTCAGCAGTCACTCATTTCTCAGACAGAAAAGTGACCCTCTCCTCCACTCGTTTTCTCGCTTCCTCTTCAGAACTCTTTGGCCTCTGCACCGATTTCTCGTACCACTATGTGGGTGTTCGAGCTTCCAATCCCGCGTCTAAAATGGTTGTTCATTGCATGTCTTCTGCCACAGATGTTCCCACTGTTTCTGAGACAAAGTTAAATTTCCTCAAGACATATAATCGACCAATCCCCAGTATCTACAACACTGTGCTGCAGGAGCTAATAGTGCAGCAACATTTAATGAGATACAAGAAATATTACCGCTATGACCCTGTGTTTGCTCTTGGTTTCGTCACTGTATATGATAAGCTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCCATCTTCCAAGCCTACATTAAGGCATTGAAGGAAGATCCAGAACATTACAGAATAGATGCACGAAAGTTGGAAGAGTGGGCTCGAGTTCAAAACTCAACTTCTCTTGTTGAGTTTTCATCCAAAGAAGGAGAAGTTGAGGGGATTTTAAAGGATATTGCAGAGAGAGCAGGGGGAAAAGGGGAATTCAGTTATAGTCGTTTCTTTGCAGTTGGACTCTTTCGTCTTCTTGAGTTGACAAATGCCACGGAACCAACAATTTTGGACAAGCTTTGTGCGGCATTGAACATCAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAACCTGCTTTCAAAGTTGGTTCAAGCAAAAGAGCTGCTAAAGGAGTATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAAAAGGCTAATGAGGCCATCACAACATGTTTGGGACAACAATTGCCTGGTCTGTAG 891 0.4377 MAALTSLSFSAVTHFSDRKVTLSSTRFLASSSELFGLCTDFSYHYVGVRASNPASKMVVHCMSSATDVPTVSETKLNFLKTYNRPIPSIYNTVLQELIVQQHLMRYKKYYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYIKALKEDPEHYRIDARKLEEWARVQNSTSLVEFSSKEGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELTNATEPTILDKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKANEAITTCLGQQLPGL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03585 296 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 292 IPR017499 GO:0010207|GO:0015979
Pumo4g03585 296 Coils Coil 247 277 - -
Pumo4g03585 296 Hamap Protein Thf1 [thf1]. 65 273 IPR017499 GO:0010207|GO:0015979
Pumo4g03585 296 NCBIfam photosystem II biogenesis protein Psp29 67 272 IPR017499 GO:0010207|GO:0015979
Pumo4g03585 296 Pfam Thylakoid formation protein 70 275 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03585 Pumo-Chr4 74490468 74494286 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03585 - - gmx:100814341 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03585 4 74490468 74494286 Pumo4g03585 4 74490468 74494286 ECH
Pumo4g03585 4 74490468 74494286 Pumo11g01136 11 39953526 39957214 PCT