Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01136 ATGGCCACTGTTACTTCTTCTTTCTCTTTCTCCACTCTCACTCAATCTTCGCAGAGGAGCCTCACCCTCTCTTCCAATTCACCAAGTACCTTTCGCTTCCGCGTTGGTTTCTCCTGCCACTATGTTGGAGTTCGAGCTTCCAATTCTGCTTCCAAAATGGTTGTTCGCTGCTCCTCTTCCGTTGCAGAGCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGACCGATTCCTAGTATCTACAACACGGTGCTGCAGGAGCTCATTGTTCAGCAACATTTGATGAGATACAAGAGATCATATCGCTATGACGCTGTGTTTGCCCTTGGCTTTGTCACTGTATATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTCAGGCATTGAAAGAAGATCCTGAACAATACAGAGTAGATGCAAAGAAATTGGAAGAGTGGGCTCGAGCTCAAAACCCAACTTCGCTAGTTGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGAATATTAAAGGATATTGCAGAAAGAGCTGGAGGAAAGGGCGATTTCAGTTACAGTCGTTTCTTTGCAATAGGCCTCTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTCTGTGCGGTTTTGAATGTCAACAAAAGAAGTGTGGATCGGGACTTGGACGTGTACCGTAATTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGCTGCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAAAAGTCTAATGAGGCCATTACACAACAACAGCAATTTTCTAGCCTTTAG 873 0.4364 MATVTSSFSFSTLTQSSQRSLTLSSNSPSTFRFRVGFSCHYVGVRASNSASKMVVRCSSSVAEPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARAQNPTSLVEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKSNEAITQQQQFSSL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01136 290 Coils Coil 243 273 - -
Pumo11g01136 290 Hamap Protein Thf1 [thf1]. 61 269 IPR017499 GO:0010207|GO:0015979
Pumo11g01136 290 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 284 IPR017499 GO:0010207|GO:0015979
Pumo11g01136 290 MobiDBLite consensus disorder prediction 264 290 - -
Pumo11g01136 290 NCBIfam photosystem II biogenesis protein Psp29 62 268 IPR017499 GO:0010207|GO:0015979
Pumo11g01136 290 Pfam Thylakoid formation protein 66 271 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01136 Pumo-Chr11 39953526 39957214 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01136 - - gmx:100779964 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01136 11 39953526 39957214 Pumo11g01136 11 39953526 39957214 ECH
Pumo4g03585 4 74490468 74494286 Pumo11g01136 11 39953526 39957214 PCT