Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02155 ATGTCTGGACCCCTGTCACCAAAGACATCTCTTGAAAAGAGTGACCGTGTTGGTTCTTTGAAGAAAATGCTGAGGAATTCACTGACAAGGAGTAAGAGGCGAAGCAGCAGCAAGGTCATGTCAGTTGAAATCGAGGATATCCGCGATGCTGAAGAGTCCAAAGCTGTTGATGAGTTCCGTCAAGCCCTTGTCTTGGAAGAGCTACTCCCTGAGAAGCACGATGATTATCACATGATGCTCAGGTTCCTTAAGGCCAGGAAATTTGACCTTGAGAAATCTAAGCAAATGTGGTCTGACATGCTTCAGTGGAGGAAGGAATTTGGTGCTGACACCATCACCGAGGATTTTGAATTCAAGGAACTCGATGAAGTCTTGCAATATTACCCACATGGACATCATGGAGTTGATAAAGATGGACGACCAATTTACATTGAGAGGTTGGGCCAAGTAGATGCCACCAAGTTGATGCAAGTCACAACCATGGATCGCTATATCAAATACCATGTCAAGGAGTTTGAGAGGACTTTTGATGTGAAATTCGCAGCTTGCTCCATTGCTGCAAAGAAACACATCGATCAAAGCACAACCATCCTTGATGTGCAAGGAGTGGGCCTTAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACCCGCCTTCAAAAGATTGACGGTGACAACTACCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACCGTTAAATCCTTCCTTGACCCAAAGACCACAGCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATGATTGATGAGAGTGAGTTGCCAGAGTTTTTGGGAGGTGCTTGCACCTGTGCTGATCAAGGAGGCTGCATGCGCTCTGATAAGGGCCCTTGGAAGGATGCAGAAATAATGAGGATGGTTCAAAATGGTGAGCACAAATGTTCAAGGAAATGTGAGGCTCCTGTCATGGAAGAGAAGACAACTTCTGAGGCCCCTGCTACTAAGGCTTACAACTACGAGGACTTTGTCCCCTCGGCTGAAAAAACTGCTTGGAACAAAAAGATGGAAGAAAATGAGAAATTTGCAGTACAGAAAGGTAGAATTGCATTTCTTTCTGGAGCAGACGTATACGCCATGGTTGATTCGTTCAAGATTCACGAAAAAGTGAACTCACAGATCTTCACTGGCGTGATGGCCTTTGTGATGGGCATAGTGACCATGGTGAGGATGACCAGGAACATGCCAAAGAAGCTCACAGACGCCAACTTCTACTCCAACTTGGGTGGCGAATACAAAGGGCAGGGCGCCAATTCTGACCAGATGACTACCATGCCTAACATCTCTGCTCAAGAGTTCATGACTGTGATGAAACGCATGGCTGAGTTGGAAGACAAAATGATCACCATGAACAACCAGGCCACCTGCATGCCACCTGAGAAGGAAGAAATGCTCAATGCTGCTATTACCCGCGCAGATGCTTTGGAGCAAGAACTCTTGGCAACCAAAAAGGCTTTGGAGGATTCACTTTCTAAGCAAGAGGAGCTTTCGGCTTACATTGACAAGAAGAAGAAGAAGAAGAAGTTGTTCGTTTGGTAA 1620 0.4556 MSGPLSPKTSLEKSDRVGSLKKMLRNSLTRSKRRSSSKVMSVEIEDIRDAEESKAVDEFRQALVLEELLPEKHDDYHMMLRFLKARKFDLEKSKQMWSDMLQWRKEFGADTITEDFEFKELDEVLQYYPHGHHGVDKDGRPIYIERLGQVDATKLMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELITRLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEMIDESELPEFLGGACTCADQGGCMRSDKGPWKDAEIMRMVQNGEHKCSRKCEAPVMEEKTTSEAPATKAYNYEDFVPSAEKTAWNKKMEENEKFAVQKGRIAFLSGADVYAMVDSFKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNLGGEYKGQGANSDQMTTMPNISAQEFMTVMKRMAELEDKMITMNNQATCMPPEKEEMLNAAITRADALEQELLATKKALEDSLSKQEELSAYIDKKKKKKKLFVW 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02155 539 SUPERFAMILY CRAL/TRIO domain 120 316 IPR036865 -
Pumo4g02155 539 CDD SEC14 121 288 IPR001251 -
Pumo4g02155 539 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 13 531 - -
Pumo4g02155 539 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Pumo4g02155 539 Coils Coil 492 523 - -
Pumo4g02155 539 Pfam CRAL/TRIO, N-terminal domain 57 99 IPR011074 -
Pumo4g02155 539 Gene3D - 19 107 - -
Pumo4g02155 539 PRINTS Cellular retinaldehyde-binding protein signature 78 100 - -
Pumo4g02155 539 PRINTS Cellular retinaldehyde-binding protein signature 247 266 - -
Pumo4g02155 539 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Pumo4g02155 539 MobiDBLite consensus disorder prediction 1 36 - -
Pumo4g02155 539 FunFam SEC14 cytosolic factor 108 320 - -
Pumo4g02155 539 Gene3D - 108 320 IPR036865 -
Pumo4g02155 539 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Pumo4g02155 539 SMART sec14_4 120 291 IPR001251 -
Pumo4g02155 539 SUPERFAMILY CRAL/TRIO N-terminal domain 49 116 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02155 Pumo-Chr4 31269164 31274370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02155 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 27.236 2.30e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02155 K26544 - gmx:100785716 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02155 4 31269164 31274370 Pumo4g02155 4 31269164 31274370 ECH
Pumo10g00724 10 9245806 9249545 Pumo4g02155 4 31269164 31274370 ECH