Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00724 ATGTCCGCACCTGTTGACCGGCCCATGAGACTTGGTCATGAAATTGAATGTTCCGAGGATGAAAGGAAGAAAAAGCTTGGATCCTTCAAGAAGGTGGCAATCAGCGCCTCATCCAAGTTCAAGCATTCCTTTAACAAGAGGGGGCGGAGGCACAGCAGGGTTATGTCTGTTTCTATTGAGGATGATCTTGATGCAGAAGAGTTGCAAGCAGTTGATGCTTTTCGCCAAGCACTCATCTTGGAAGAGCTATTGCCCGCAAAACATGATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGGCAGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGAGGATTTTGAATTCAAGGAACAAGAGGAGGTTTTAAAATACTACCCACAAGGGCATCATGGGGTTGACAAGGATGGCCGACCTGTTTACATTGAAAAGTTGGGTCAGGTTGACTCTACCAAGCTGATGCAAGTAACAACAATGGAACGTTATCTCAAGTACCATGTCAAAGAGTTTGAGAGGACCTTTGCTGTTAAGTTGCCTGCGTGTTCCATTGCGGCAAAGAAGCACATTGACCAAAGCACAACTATTTTGGATGTGCAAGGAGTGGGTCTTAAAAGTTTGAACAAAGCTGCAAGGGATCTCCTACAGAGGCTTCAGAAGATTGATGGCGACAACTACCCTGAGTCACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACCGTTAAGTCATTCCTAGACCCCAAGACCACCGCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGCACTTGTGCAGATAAAGGTGGTTGTATGCTTTCTGACAAGGGACCATGGAATGACCCAGACATCTTGAAGATGGTTCACAATGGCGAGGGCAAATGCAAGAGAAGAACCTTATCCGGGATTAAGGAGAAAACAATCATAGAAGATGATACAGCACACCAAAATGTAGGAAACAAAGAATCATTTCCAGAAACATATGATGTTGATGTGCCATGTTTATATCCAAAAGTAAAGCAATGTGATGTGTATAAATATGACGCATTTGTCCCTGTGCTTGGCAAGCCAGTCGATTCATCTTGGAATAAATTAATACAGAATGACAAAGATGTACTTTCTAAAGGTGCAGATTGTTTTCCTAGCAAGACTTGTGATGGGTATAGCAATCACTTTGTTGGAGGAGTGATGGCCCTTGTTATGGGAATTGTAACAATGATCCGCATGACAAGGAACATGCCAAGGAAAATCACTGAAGCAACACTGTATGGCAGCTCAGGATATTATGATGGCACTATGATGAAAGCACCCACCATTTCATGCAATGATTACATGGCCATGATGAAGCGCATGGCTGAACTAGAAGAGAAAGTCACTGTCCTCAGCAAGAGACCTTTCATGCCACCCGAAAAGGAGGAAGTGCTCAATATTGCTCTAAGCAGAGTCACCACTCTCGAACAAGACTTGGTTGCAACCAAAAAGGCACTTGATGATGCCCTTGCTCGACAAGTAGAACTCCAAGCTCAAATTGACAAGAAGAAGAAGAAGAACAAATTGTTACGCTTCGGCTGTTTTGCTGCGTGA 1710 0.4339 MSAPVDRPMRLGHEIECSEDERKKKLGSFKKVAISASSKFKHSFNKRGRRHSRVMSVSIEDDLDAEELQAVDAFRQALILEELLPAKHDDHHMMLRFLRARKFDIEKTKQMWADMLKWRQEFGADTIMEDFEFKEQEEVLKYYPQGHHGVDKDGRPVYIEKLGQVDSTKLMQVTTMERYLKYHVKEFERTFAVKLPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPDILKMVHNGEGKCKRRTLSGIKEKTIIEDDTAHQNVGNKESFPETYDVDVPCLYPKVKQCDVYKYDAFVPVLGKPVDSSWNKLIQNDKDVLSKGADCFPSKTCDGYSNHFVGGVMALVMGIVTMIRMTRNMPRKITEATLYGSSGYYDGTMMKAPTISCNDYMAMMKRMAELEEKVTVLSKRPFMPPEKEEVLNIALSRVTTLEQDLVATKKALDDALARQVELQAQIDKKKKKNKLLRFGCFAA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00724 569 SUPERFAMILY CRAL/TRIO N-terminal domain 61 131 IPR036273 -
Pumo10g00724 569 Gene3D - 123 334 IPR036865 -
Pumo10g00724 569 CDD SEC14 137 304 IPR001251 -
Pumo10g00724 569 Gene3D - 27 122 - -
Pumo10g00724 569 SUPERFAMILY CRAL/TRIO domain 136 330 IPR036865 -
Pumo10g00724 569 Coils Coil 486 506 - -
Pumo10g00724 569 Coils Coil 524 558 - -
Pumo10g00724 569 FunFam SEC14 cytosolic factor 123 335 - -
Pumo10g00724 569 PRINTS Cellular retinaldehyde-binding protein signature 93 115 - -
Pumo10g00724 569 PRINTS Cellular retinaldehyde-binding protein signature 262 281 - -
Pumo10g00724 569 PRINTS Cellular retinaldehyde-binding protein signature 295 304 - -
Pumo10g00724 569 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 135 309 IPR001251 -
Pumo10g00724 569 SMART CRAL_TRIO_N_2 90 115 IPR011074 -
Pumo10g00724 569 SMART sec14_4 135 306 IPR001251 -
Pumo10g00724 569 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 14 556 - -
Pumo10g00724 569 Coils Coil 220 240 - -
Pumo10g00724 569 Pfam CRAL/TRIO domain 141 303 IPR001251 -
Pumo10g00724 569 Pfam CRAL/TRIO, N-terminal domain 87 114 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00724 Pumo-Chr10 9245806 9249545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00724 69 300 Acyl Lipid Metabolism Gene Families AT5G47730 28.216 1.22e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00724 K26544 - gmx:100798374 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00724 10 9245806 9249545 Pumo10g00724 10 9245806 9249545 ECH
Pumo10g00724 10 9245806 9249545 Pumo4g02155 4 31269164 31274370 ECH