Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01642 ATGCGAGTAAAGGAAATGCATCCGTTGTGCTGCATCTCGCTGGAGAGTCCGGGGATCGGGAGCGACTCGCCGGAGCCGGAGGCGGCGGCGCTGTCGAGGACGAGGAGTCTTCCGGCGGGTGGATCTGATGGCATTGCGCGGCGGGGATCGGAGGCTACGGTGGCGGGAGTTCTCTACAAGTGGACCAATTACGGCAAGGGATGGAGATCCCGCTGGTTCCTCCTCCGCAATGGCGTCCTCTCCTACGCCAAGATCCGCTGGCCGGAAAACCTCAACCTCCTCTCTCCTGTCGACGACGTCCGCCTCATCGGAGAAGTCACCGCCAACCGCCTCGCCAGAGAAGCCGCCGCCGCCGCCGCCACCGTGCGCCGGAAGAATCACAAACCTCCTTCCTCCTCCTCCGCGGTCGTCCATCTCAAGATCTCGTCATTCAGAGAGAGCAAGTCAGACGATAGACGGTTCTATATATTCACAGCAACAAAGACTCTTCATCTGAGGACTGATTCGAGGAAGGACCGTGTGGCGTGGATACAAGCTTTGGTTTCAACCCGTGGATTGTACCCACTTCGACCACTCAGTGACCATCTCTCCCTCGCACCAAATCATATATCTGTGTCAACTGAGAAGCTTAAGAAACGCTTGCTTGAAGAGGGTAGCAGTGAGAGCCTTGTCAAGGATTGCGAGCAAATCATGCTCGCTGAGTTCTCCGAATTACAAGAGCAACTTCAGATCCTATGTCAGGAACGAATGAATTTGCTTGATACAATAAGGCAGCTGGAGGCTGCTAATATTGAACCTGAGGCCACTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGAATGCAGTACTACGGAATCATCTGATGATATTGAGAAACAGGAGATGGAGGAAGTGTCAGATGAAGATGAAATCTCATATTATGACACTAAAGAGTATTTTACAGAACATGGTTTTAGGTGTGGGTCAGCAGGAGGTTTGGATCCAATGAACATGCCTGGGGAAGTTAACACACAGTGCATTGATTTGGAGAATAGTCTTGTTGGGAAGACGATCAATGATTTTGGGTACCCTCAGATAGCAAGGCGAAAGAAGCTTCCAGATCCTGTTGAGAAAGAGAAGGGCGTTAGTCTTTGGTCAATTATCAAAGACAATGTGGGCAAAGATCTCACACGAGTGTGTCTTCCTGTATACTTTAATGAGCCAATATCATCTCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTTTCTTCTGGATCAAGCTTATGAGTATGGAAAATCAGGAAACAGTCTCCTTCGGGCACTGAATGTTGCTGCCTTTGCAGTTTCTGGATATGCATCATCTGAAGGTCGTCATTGTAAACCCTTTAATCCATTGTTAGGGGAAACTTACGAAGCTGATTATCCTGACAAAGGAGTTCGCTTCTTTTCTGAGAAGGTGAGTCACCATCCAACTGTAGTTGCCTGCCACTGTGAAGGTAGAGGATGGAAGTTTTGGGCTGACAGTAACATTCGGTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTGGGAGTTCTGACCCTAGAGTTTGATGATGGTGAAATATTTCAGTGGAGCAAGGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACATCCGTGGTAATCGCCAACATTCGTGCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGGTGCATGGCTTTGTTGAAGATGTAACGGGAAAAAAGGTTGCCACATTATTTGGCAAGTGGGATGACAGCATTTATTATGTTAATGGTGAAGTGAATGTGAAGCCAAAAGATTTCACTATGTCAGACGCAAACTTGTTGTGGAAAAGGACTAAGCCACCTTCTAATCTCACCCGCTACAATTTGACATCATTTGCCATCACACTGAATGAGCTTACTCCCGGGCTAAAGGAGAAGCTTCCACCCACGGATTCCAGGCTGAGACCAGATCAGCGGCATCTAGAGAATGGGGAATACGAGAAGGCTAATATGGAAAAGCAAAGGTTGGAAAAGAGGCAAAGAATGTCAAGGAAAATGCAAGAAAATGGATGGCAGCCTAGGTGGTTCCACAGAGAAGGAGAAAATGGAACCTTCCGCTATGTTGGCGGGTATTGGGAAGCAAAAGCTCTAGGAAGATGGAATGGATGCCCAAATATCTTCGGTGAAATTCATGAAGGCAATTTTGATCCTTTAGGTGCATCTTGA 2307 0.4707 MRVKEMHPLCCISLESPGIGSDSPEPEAAALSRTRSLPAGGSDGIARRGSEATVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRWPENLNLLSPVDDVRLIGEVTANRLAREAAAAAATVRRKNHKPPSSSSAVVHLKISSFRESKSDDRRFYIFTATKTLHLRTDSRKDRVAWIQALVSTRGLYPLRPLSDHLSLAPNHISVSTEKLKKRLLEEGSSESLVKDCEQIMLAEFSELQEQLQILCQERMNLLDTIRQLEAANIEPEATALHDSEYQLTKNEFSSLGRGKYSECSTTESSDDIEKQEMEEVSDEDEISYYDTKEYFTEHGFRCGSAGGLDPMNMPGEVNTQCIDLENSLVGKTINDFGYPQIARRKKLPDPVEKEKGVSLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSFLLDQAYEYGKSGNSLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSHHPTVVACHCEGRGWKFWADSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTTIYNLILGKIYCDHHGNMDIRGNRQHSCRLKFKEQAILDRNPHQVHGFVEDVTGKKVATLFGKWDDSIYYVNGEVNVKPKDFTMSDANLLWKRTKPPSNLTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANMEKQRLEKRQRMSRKMQENGWQPRWFHREGENGTFRYVGGYWEAKALGRWNGCPNIFGEIHEGNFDPLGAS 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01642 768 Gene3D - 685 742 - -
Pumo4g01642 768 Gene3D - 475 647 - -
Pumo4g01642 768 ProSiteProfiles PH domain profile. 51 185 IPR001849 -
Pumo4g01642 768 MobiDBLite consensus disorder prediction 15 45 - -
Pumo4g01642 768 FunFam Oxysterol-binding protein-related protein 2A 685 756 - -
Pumo4g01642 768 Coils Coil 242 262 - -
Pumo4g01642 768 SUPERFAMILY Oxysterol-binding protein-like 384 761 IPR037239 -
Pumo4g01642 768 Pfam Oxysterol-binding protein 389 742 IPR000648 GO:0008289
Pumo4g01642 768 Gene3D - 48 185 IPR011993 -
Pumo4g01642 768 SMART PH_update 52 187 IPR001849 -
Pumo4g01642 768 Coils Coil 686 715 - -
Pumo4g01642 768 FunFam oxysterol-binding protein-related protein 1D isoform X1 475 646 - -
Pumo4g01642 768 Pfam Pleckstrin homology domain 56 180 - -
Pumo4g01642 768 SUPERFAMILY PH domain-like 51 182 - -
Pumo4g01642 768 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 53 742 IPR000648 GO:0008289
Pumo4g01642 768 MobiDBLite consensus disorder prediction 289 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01642 Pumo-Chr4 20831309 20841876 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01642 K20456 - gmx:100812205 1499.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01642 4 20831309 20841876 Pumo4g01642 4 20831309 20841876 ECH
Pumo8g02216 8 59224941 59235457 Pumo4g01642 4 20831309 20841876 PCT