Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01578 ATGCACTTCGGTGGGTTTGAGAGGGAGGAGGGTGTTTATAAGCTACCATTGGCCTCGACTCCTAAGCGATGTGGGACTTTGTGTGGCTACCGAAACAAAGGCATTAGAAACATTCATACATGGGCTTCCCTGCCAACGGCGCCTCCGCGGAACAGTCCCTCAAGTTCCTCATCTACGGCCGCACGGGCTGGATTGGCGGCCTCCTCAGGCACCCTCTGCCGGGCCCAGAGCATCCCCTTCGAATACGGCTCAGGCCGCCTCGAGAACCGGGCCTCACTCGAAAAGGACATAGCCGAGCTCAAGCCCACCCACGTCTTCAACGCCGCCGGCGTCACGGGCCGGCCCAACGTCGACTGGTGCGAGTCCCACAAAGTGGAGACCATCCGAACCAACGTGGTTGGAACCCTCACTCTCGCCGACGTGTGCCGCGACAATGGCCTCATCCTTATCAACTACGCCACGGGCTGCATCTTCGAGTACGATTCCGATCACCCTCTCGGATCTGGAATCGGCTTCAAAGAAAACGACACTCCCAATTTCACCGGTTCTTTTTACTCCAAGACCAAGGCCATGGTAGAGGATTTGCTGAAGAACTACGATAATGTGTGTACTTTGCGAGTGAGGATGCCTATCTCGTCTGATTTATCGAACCCGCGCAATTTCATCACGAAGATCACTCGGTACGAGAAGGTTGTGGATATTCCGAATTCGATGACTATATTGGATGAACTTCTTCCGATCTCCATAGAGATGGGGAAGAGGAATCTGACTGGGATCTGGAACTTCACGAACCCTGGAGTGGTTAGTCACAATGAAATCTTGGAGATGTACAGAGAATATGTTGACCCCAGCTTCACCTGGAAGAACTTCACTCTTGAGGAACAGGCGAAGGTGATTGTTGCCCCGAGGAGCAACAATGAGCTTGACGCCGCGAAATTGAAGAAGGAATTTCCAGAGCTGTTGTCCATCAAGGATTCTCTCATTAAGTATGTCTTCGAGCCAAACCAGAAGTTTAAAGTTTGA 1023 0.523 MHFGGFEREEGVYKLPLASTPKRCGTLCGYRNKGIRNIHTWASLPTAPPRNSPSSSSSTAARAGLAASSGTLCRAQSIPFEYGSGRLENRASLEKDIAELKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDNGLILINYATGCIFEYDSDHPLGSGIGFKENDTPNFTGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKITRYEKVVDIPNSMTILDELLPISIEMGKRNLTGIWNFTNPGVVSHNEILEMYREYVDPSFTWKNFTLEEQAKVIVAPRSNNELDAAKLKKEFPELLSIKDSLIKYVFEPNQKFKV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01578 340 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 59 340 - -
Pumo4g01578 340 Pfam NAD dependent epimerase/dehydratase family 72 220 IPR001509 -
Pumo4g01578 340 MobiDBLite consensus disorder prediction 44 61 - -
Pumo4g01578 340 Gene3D - 68 340 - -
Pumo4g01578 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 88 315 IPR036291 -
Pumo4g01578 340 MobiDBLite consensus disorder prediction 42 61 - -
Pumo4g01578 340 PANTHER DTDP-4-DEHYDRORHAMNOSE REDUCTASE 85 337 IPR005913 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01578 Pumo-Chr4 19950652 19952567 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01578 K12451 - gmx:100781643 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01578 4 19950652 19952567 Pumo4g01578 4 19950652 19952567 ECH
Pumo4g01578 4 19950652 19952567 Pumo8g02267 8 59834153 59835675 PCT