Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01492 ATGGAAGTGAAGAAAGTTTTATTTGTTGCTCTATCCCTTGCTTTGGTTCTAGGAATGGCTGAGAGCTTTGATTTCAATGAGAAGGACTTAGAATTCGAGGAAGGGTTGTGGGATTTGTACGAGAGATGGAGGAGCCACCACACGGTTTCTCGAAGCCTCGATGAGAAGCACAACCGCTTCAACGTGTTCAAAGCCAACGTGATGCATGTCCACAACACCAATAAAATGGACAAGCCTTACAAGCTGAAGTTGAACAGGTTCGCTGACATGACCAACCATGAATTCAGGACCATCTATGCTGGCTCCAAGGTTAATCATCACACAATGTTCCGAGGCACCCCACGTGAGAATGGTACTTTCATGTATGAGAACGTTGACAGGGTTCCGCATTCGGTGGATTGGAGGAAGAAAGGTGCAGTCACTGATGTAAAGGATCAAGGCCAATGCGGTAGTTGTTGGGCTTTTTCAACTATTGTAGCTGTTGAAGGTATTAACCAAATCAAGACACATAAGCTAGTGCCCTTGTCTGAGCAAGAACTTGTAGATTGTGACACTACACAGAATCAAGGATGCAATGGTGGGTTAATGGAAACTGCATTCGAGTTTATCAAGCAACATGGTATAACTACAGCAAGCAATTACCCTTATGAAGCAAAAGATAGAACCTGTGATGCATCAAAGGAGAATGAACCTGCAGTGTCAATTGATGGCCATGAGAATGTACCCGTGAACAATGAGGCCGCATTGCTCAAAGCTGTTGCCCATCAACCTGTATCAGTAGCCATTGAAGCTGGGGGAATTGACTTCCAGTTCTATTCAGAGGGAGTATTTACGGGAGACTGTGGCACTGCTCTGGATCATGGGGTAGCAATTGTGGGCTATGGAACAACTCAAGATGGAACCAAATATTGGACAGTGAAAAACTCATGGGGATCTGAATGGGGAGAAAAGGGTTACCTTAGAATGCAAAGGAGCATATCTGACAAGAAAGGTCTATGTGGCATAGCAATGCAAGCTTCCTATCCAATCAAAAAATCCTCTAGCAAACCAATGGAACATTCATCATTTCCTAAAGACGAGCTTTAA 1086 0.4401 MEVKKVLFVALSLALVLGMAESFDFNEKDLEFEEGLWDLYERWRSHHTVSRSLDEKHNRFNVFKANVMHVHNTNKMDKPYKLKLNRFADMTNHEFRTIYAGSKVNHHTMFRGTPRENGTFMYENVDRVPHSVDWRKKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTHKLVPLSEQELVDCDTTQNQGCNGGLMETAFEFIKQHGITTASNYPYEAKDRTCDASKENEPAVSIDGHENVPVNNEAALLKAVAHQPVSVAIEAGGIDFQFYSEGVFTGDCGTALDHGVAIVGYGTTQDGTKYWTVKNSWGSEWGEKGYLRMQRSISDKKGLCGIAMQASYPIKKSSSKPMEHSSFPKDEL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01492 361 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Pumo4g01492 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 37 338 IPR013128 GO:0008234
Pumo4g01492 361 SMART Inhibitor_I29_2 40 95 IPR013201 -
Pumo4g01492 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Pumo4g01492 361 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
Pumo4g01492 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Pumo4g01492 361 CDD Peptidase_C1A 129 342 IPR039417 -
Pumo4g01492 361 FunFam Senescence-specific cysteine protease SAG39 20 344 - -
Pumo4g01492 361 SUPERFAMILY Cysteine proteinases 37 343 IPR038765 -
Pumo4g01492 361 Gene3D Cysteine proteinases 14 345 - -
Pumo4g01492 361 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Pumo4g01492 361 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Pumo4g01492 361 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Pumo4g01492 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Pumo4g01492 361 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01492 Pumo-Chr4 18845983 18848679 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01492 K16292 - gmx:100806581 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01492 4 18845983 18848679 Pumo4g01492 4 18845983 18848679 ECH
Pumo4g01492 4 18845983 18848679 Pumo10g01942 10 25605900 25608094 PCT